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SYNJ1 synaptojanin 1 [ Bison bison bison ]

Gene ID: 105004629, updated on 13-Mar-2024

Summary

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Gene symbol
SYNJ1
Gene description
synaptojanin 1
See related
Ensembl:ENSBBBG00000007094
Gene type
protein coding
RefSeq status
MODEL
Organism
Bison bison bison (sub-species: bison)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bison
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
100 current Bison_UMD1.0 (GCF_000754665.1) Unplaced Scaffold NW_011495041.1 (2150400..2241284)

NW_011495041.1Genomic Context describing neighboring genes Neighboring gene exosomal polycystin 1 interacting protein Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene 60S ribosomal protein L34 pseudogene Neighboring gene cilia and flagella associated protein 298 Neighboring gene eva-1 homolog C

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011495041.1 Unplaced Scaffold Reference Bison_UMD1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bison bison bison Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bison_UMD1.0 Primary Assembly

Genomic

  1. NW_011495041.1 Reference Bison_UMD1.0 Primary Assembly

    Range
    2150400..2241284
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010862298.1 → XP_010860600.1  synaptojanin-1

    See identical proteins and their annotated locations for XP_010860600.1

    UniProtKB/TrEMBL
    A0A6P3JB35
    Conserved Domains (4) summary
    cd09098
    Location:528 → 863
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:60 → 340
    Syja_N; SacI homology domain
    pfam08952
    Location:862 → 1003
    DUF1866; Domain of unknown function (DUF1866)
    pfam16601
    Location:1307 → 1449
    NPF; Rabosyn-5 repeating NPF sequence-motif

  2. XM_010862297.1 → XP_010860599.1  synaptojanin-1

    See identical proteins and their annotated locations for XP_010860599.1

    UniProtKB/TrEMBL
    A0A6P3JB35
    Conserved Domains (4) summary
    cd09098
    Location:528 → 863
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:60 → 340
    Syja_N; SacI homology domain
    pfam08952
    Location:862 → 1003
    DUF1866; Domain of unknown function (DUF1866)
    pfam16601
    Location:1307 → 1449
    NPF; Rabosyn-5 repeating NPF sequence-motif

  3. XM_010862296.1 → XP_010860598.1  synaptojanin-1

    See identical proteins and their annotated locations for XP_010860598.1

    UniProtKB/TrEMBL
    A0A6P3JB35
    Related
    ENSBBBP00000009341.1, ENSBBBT00000017496.1
    Conserved Domains (4) summary
    cd09098
    Location:528 → 863
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:60 → 340
    Syja_N; SacI homology domain
    pfam08952
    Location:862 → 1003
    DUF1866; Domain of unknown function (DUF1866)
    pfam16601
    Location:1307 → 1449
    NPF; Rabosyn-5 repeating NPF sequence-motif
Nucleotide Protein
Heading Accession and Version

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