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LPP LIM domain containing preferred translocation partner in lipoma [ Bison bison bison ]

Gene ID: 104998644, updated on 12-Mar-2024

Summary

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Gene symbol
LPP
Gene description
LIM domain containing preferred translocation partner in lipoma
See related
Ensembl:ENSBBBG00000020167
Gene type
protein coding
RefSeq status
MODEL
Organism
Bison bison bison (sub-species: bison)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bison
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current Bison_UMD1.0 (GCF_000754665.1) Unplaced Scaffold NW_011494905.1 (3484043..4238406)

NW_011494905.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104998642 Neighboring gene uncharacterized LOC104998643 Neighboring gene tumor protein p63 regulated 1 Neighboring gene embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011494905.1 Unplaced Scaffold Reference Bison_UMD1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lipoma-preferred partner

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bison bison bison Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bison_UMD1.0 Primary Assembly

Genomic

  1. NW_011494905.1 Reference Bison_UMD1.0 Primary Assembly

    Range
    3484043..4238406
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010853933.1 → XP_010852235.1  lipoma-preferred partner

    See identical proteins and their annotated locations for XP_010852235.1

    UniProtKB/TrEMBL
    A0A6P3ICB3
    Conserved Domains (4) summary
    cd09350
    Location:418 → 471
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:478 → 530
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:538 → 603
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cl23807
    Location:236 → 293
    WWbp; WW-domain ligand protein

  2. XM_010853935.1 → XP_010852237.1  lipoma-preferred partner

    See identical proteins and their annotated locations for XP_010852237.1

    UniProtKB/TrEMBL
    A0A6P3ICB3
    Conserved Domains (4) summary
    cd09350
    Location:418 → 471
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:478 → 530
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:538 → 603
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cl23807
    Location:236 → 293
    WWbp; WW-domain ligand protein

  3. XM_010853931.1 → XP_010852233.1  lipoma-preferred partner

    See identical proteins and their annotated locations for XP_010852233.1

    UniProtKB/TrEMBL
    A0A6P3ICB3
    Conserved Domains (4) summary
    cd09350
    Location:418 → 471
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:478 → 530
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:538 → 603
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cl23807
    Location:236 → 293
    WWbp; WW-domain ligand protein

  4. XM_010853930.1 → XP_010852232.1  lipoma-preferred partner

    See identical proteins and their annotated locations for XP_010852232.1

    UniProtKB/TrEMBL
    A0A6P3ICB3
    Conserved Domains (4) summary
    cd09350
    Location:418 → 471
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:478 → 530
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:538 → 603
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cl23807
    Location:236 → 293
    WWbp; WW-domain ligand protein

  5. XM_010853929.1 → XP_010852231.1  lipoma-preferred partner

    See identical proteins and their annotated locations for XP_010852231.1

    UniProtKB/TrEMBL
    A0A6P3ICB3
    Conserved Domains (4) summary
    cd09350
    Location:418 → 471
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:478 → 530
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:538 → 603
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cl23807
    Location:236 → 293
    WWbp; WW-domain ligand protein

  6. XM_010853926.1 → XP_010852228.1  lipoma-preferred partner

    See identical proteins and their annotated locations for XP_010852228.1

    UniProtKB/TrEMBL
    A0A6P3ICB3
    Conserved Domains (4) summary
    cd09350
    Location:418 → 471
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:478 → 530
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:538 → 603
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cl23807
    Location:236 → 293
    WWbp; WW-domain ligand protein

  7. XM_010853927.1 → XP_010852229.1  lipoma-preferred partner

    See identical proteins and their annotated locations for XP_010852229.1

    UniProtKB/TrEMBL
    A0A6P3ICB3
    Conserved Domains (4) summary
    cd09350
    Location:418 → 471
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:478 → 530
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:538 → 603
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cl23807
    Location:236 → 293
    WWbp; WW-domain ligand protein

  8. XM_010853928.1 → XP_010852230.1  lipoma-preferred partner

    See identical proteins and their annotated locations for XP_010852230.1

    UniProtKB/TrEMBL
    A0A6P3ICB3
    Conserved Domains (4) summary
    cd09350
    Location:418 → 471
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:478 → 530
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:538 → 603
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cl23807
    Location:236 → 293
    WWbp; WW-domain ligand protein

  9. XM_010853925.1 → XP_010852227.1  lipoma-preferred partner

    See identical proteins and their annotated locations for XP_010852227.1

    UniProtKB/TrEMBL
    A0A6P3ICB3
    Conserved Domains (4) summary
    cd09350
    Location:418 → 471
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:478 → 530
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:538 → 603
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cl23807
    Location:236 → 293
    WWbp; WW-domain ligand protein

  10. XM_010853936.1 → XP_010852238.1  lipoma-preferred partner

    See identical proteins and their annotated locations for XP_010852238.1

    UniProtKB/TrEMBL
    A0A6P3ICB3
    Related
    ENSBBBP00000012337.1, ENSBBBT00000021903.1
    Conserved Domains (4) summary
    cd09350
    Location:418 → 471
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:478 → 530
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:538 → 603
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cl23807
    Location:236 → 293
    WWbp; WW-domain ligand protein

  11. XM_010853934.1 → XP_010852236.1  lipoma-preferred partner

    See identical proteins and their annotated locations for XP_010852236.1

    UniProtKB/TrEMBL
    A0A6P3ICB3
    Conserved Domains (4) summary
    cd09350
    Location:418 → 471
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:478 → 530
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:538 → 603
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cl23807
    Location:236 → 293
    WWbp; WW-domain ligand protein

  12. XM_010853932.1 → XP_010852234.1  lipoma-preferred partner

    See identical proteins and their annotated locations for XP_010852234.1

    UniProtKB/TrEMBL
    A0A6P3ICB3
    Conserved Domains (4) summary
    cd09350
    Location:418 → 471
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:478 → 530
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:538 → 603
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cl23807
    Location:236 → 293
    WWbp; WW-domain ligand protein

  13. XM_010853937.1 → XP_010852239.1  lipoma-preferred partner

    See identical proteins and their annotated locations for XP_010852239.1

    UniProtKB/TrEMBL
    A0A6P3ICB3
    Conserved Domains (4) summary
    cd09350
    Location:418 → 471
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:478 → 530
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:538 → 603
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cl23807
    Location:236 → 293
    WWbp; WW-domain ligand protein

  14. XM_010853938.1 → XP_010852240.1  lipoma-preferred partner

    See identical proteins and their annotated locations for XP_010852240.1

    UniProtKB/TrEMBL
    A0A6P3ICB3
    Conserved Domains (4) summary
    cd09350
    Location:418 → 471
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:478 → 530
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:538 → 603
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cl23807
    Location:236 → 293
    WWbp; WW-domain ligand protein
Nucleotide Protein
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