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SNRNP40 small nuclear ribonucleoprotein U5 subunit 40 [ Bison bison bison ]

Gene ID: 104986351, updated on 12-Mar-2024

Summary

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Gene symbol
SNRNP40
Gene description
small nuclear ribonucleoprotein U5 subunit 40
See related
Ensembl:ENSBBBG00000013361
Gene type
protein coding
RefSeq status
MODEL
Organism
Bison bison bison (sub-species: bison)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bison
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Bison_UMD1.0 (GCF_000754665.1) Unplaced Scaffold NW_011494640.1 (1375491..1401328, complement)

NW_011494640.1Genomic Context describing neighboring genes Neighboring gene pumilio RNA binding family member 1 Neighboring gene sodium/potassium transporting ATPase interacting 1 Neighboring gene zinc finger CCHC-type containing 17 Neighboring gene fatty acid binding protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011494640.1 Unplaced Scaffold Reference Bison_UMD1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U5 small nuclear ribonucleoprotein 40 kDa protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bison bison bison Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bison_UMD1.0 Primary Assembly

Genomic

  1. NW_011494640.1 Reference Bison_UMD1.0 Primary Assembly

    Range
    1375491..1401328 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010836885.1 → XP_010835187.1  U5 small nuclear ribonucleoprotein 40 kDa protein

    See identical proteins and their annotated locations for XP_010835187.1

    UniProtKB/TrEMBL
    A0A6P3H7J0
    Related
    ENSBBBP00000004456.1, ENSBBBT00000008085.1
    Conserved Domains (2) summary
    cd00200
    Location:63 → 352
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:71 → 108
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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