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npc2 NPC intracellular cholesterol transporter 2 [ Notothenia coriiceps (black rockcod) ]

Gene ID: 104960909, updated on 22-Oct-2023

Summary

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Gene symbol
npc2
Gene description
NPC intracellular cholesterol transporter 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Notothenia coriiceps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Notothenia
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current NC01 (GCF_000735185.1) Unplaced Scaffold NW_011365224.1 (389430..391540, complement)

NW_011365224.1Genomic Context describing neighboring genes Neighboring gene NADP-dependent oxidoreductase domain containing 1 Neighboring gene autophagy related 2B Neighboring gene gsk3b interacting protein Neighboring gene iron-sulfur cluster assembly 2 Neighboring gene EMAP like 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011365224.1 Unplaced Scaffold Reference NC01 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cholesterol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol efflux IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular cholesterol transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
epididymal secretory protein E1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Notothenia coriiceps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NC01 Primary Assembly

Genomic

  1. NW_011365224.1 Reference NC01 Primary Assembly

    Range
    389430..391540 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010789085.1 → XP_010787387.1  epididymal secretory protein E1

    UniProtKB/TrEMBL
    A0A6I9PGR0
    Conserved Domains (1) summary
    cd00916
    Location:24 → 145
    Npc2_like; Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived ...
Nucleotide Protein
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