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ubtf upstream binding transcription factor [ Notothenia coriiceps (black rockcod) ]

Gene ID: 104959794, updated on 12-Mar-2024

Summary

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Gene symbol
ubtf
Gene description
upstream binding transcription factor
Gene type
protein coding
RefSeq status
MODEL
Organism
Notothenia coriiceps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Notothenia
Orthologs
human zebrafish all
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Genomic context

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See ubtf in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current NC01 (GCF_000735185.1) Unplaced Scaffold NW_011363756.1 (73023..85815)

NW_011363756.1Genomic Context describing neighboring genes Neighboring gene selenoprotein W, 2a Neighboring gene solute carrier family 4 member 1a (Diego blood group)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011363756.1 Unplaced Scaffold Reference NC01 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
nucleolar transcription factor 1
Names
upstream binding transcription factor, RNA polymerase I

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Notothenia coriiceps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NC01 Primary Assembly

Genomic

  1. NW_011363756.1 Reference NC01 Primary Assembly

    Range
    73023..85815
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010787695.1 → XP_010785997.1  nucleolar transcription factor 1 isoform X1

    See identical proteins and their annotated locations for XP_010785997.1

    UniProtKB/TrEMBL
    A0A6I9P629
    Conserved Domains (2) summary
    cd01390
    Location:109 → 167
    HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
    pfam14887
    Location:474 → 556
    HMG_box_5; HMG (high mobility group) box 5

  2. XM_010787694.1 → XP_010785996.1  nucleolar transcription factor 1 isoform X1

    See identical proteins and their annotated locations for XP_010785996.1

    UniProtKB/TrEMBL
    A0A6I9P629
    Conserved Domains (2) summary
    cd01390
    Location:109 → 167
    HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
    pfam14887
    Location:474 → 556
    HMG_box_5; HMG (high mobility group) box 5

  3. XM_010787702.1 → XP_010786004.1  nucleolar transcription factor 1 isoform X2

    See identical proteins and their annotated locations for XP_010786004.1

    UniProtKB/TrEMBL
    A0A6I9PE36
    Conserved Domains (2) summary
    cd01390
    Location:104 → 162
    HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
    pfam14887
    Location:469 → 551
    HMG_box_5; HMG (high mobility group) box 5

  4. XM_010787698.1 → XP_010786000.1  nucleolar transcription factor 1 isoform X1

    See identical proteins and their annotated locations for XP_010786000.1

    UniProtKB/TrEMBL
    A0A6I9P629
    Conserved Domains (2) summary
    cd01390
    Location:109 → 167
    HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
    pfam14887
    Location:474 → 556
    HMG_box_5; HMG (high mobility group) box 5

  5. XM_010787697.1 → XP_010785999.1  nucleolar transcription factor 1 isoform X1

    See identical proteins and their annotated locations for XP_010785999.1

    UniProtKB/TrEMBL
    A0A6I9P629
    Conserved Domains (2) summary
    cd01390
    Location:109 → 167
    HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
    pfam14887
    Location:474 → 556
    HMG_box_5; HMG (high mobility group) box 5

  6. XM_010787700.1 → XP_010786002.1  nucleolar transcription factor 1 isoform X1

    See identical proteins and their annotated locations for XP_010786002.1

    UniProtKB/TrEMBL
    A0A6I9P629
    Conserved Domains (2) summary
    cd01390
    Location:109 → 167
    HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
    pfam14887
    Location:474 → 556
    HMG_box_5; HMG (high mobility group) box 5

  7. XM_010787699.1 → XP_010786001.1  nucleolar transcription factor 1 isoform X1

    See identical proteins and their annotated locations for XP_010786001.1

    UniProtKB/TrEMBL
    A0A6I9P629
    Conserved Domains (2) summary
    cd01390
    Location:109 → 167
    HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
    pfam14887
    Location:474 → 556
    HMG_box_5; HMG (high mobility group) box 5

  8. XM_010787703.1 → XP_010786005.1  nucleolar transcription factor 1 isoform X2

    See identical proteins and their annotated locations for XP_010786005.1

    UniProtKB/TrEMBL
    A0A6I9PE36
    Conserved Domains (2) summary
    cd01390
    Location:104 → 162
    HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
    pfam14887
    Location:469 → 551
    HMG_box_5; HMG (high mobility group) box 5

  9. XM_010787701.1 → XP_010786003.1  nucleolar transcription factor 1 isoform X1

    See identical proteins and their annotated locations for XP_010786003.1

    UniProtKB/TrEMBL
    A0A6I9P629
    Conserved Domains (2) summary
    cd01390
    Location:109 → 167
    HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
    pfam14887
    Location:474 → 556
    HMG_box_5; HMG (high mobility group) box 5
Nucleotide Protein
Heading Accession and Version

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