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ctsla cathepsin La [ Notothenia coriiceps (black rockcod) ]

Gene ID: 104955950, updated on 12-Mar-2024

Summary

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Gene symbol
ctsla
Gene description
cathepsin La
Gene type
protein coding
RefSeq status
MODEL
Organism
Notothenia coriiceps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Notothenia
Also known as
ctsl
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current NC01 (GCF_000735185.1) Unplaced Scaffold NW_011357795.1 (168011..173502)

NW_011357795.1Genomic Context describing neighboring genes Neighboring gene inositol 1,4,5-trisphosphate receptor type 1-like Neighboring gene death-associated protein kinase 1 Neighboring gene fructose-1,6-bisphosphatase 1-like Neighboring gene fructose-1,6-bisphosphatase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011357795.1 Unplaced Scaffold Reference NC01 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis involved in protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cathepsin L1
Names
cathepsin L

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Notothenia coriiceps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NC01 Primary Assembly

Genomic

  1. NW_011357795.1 Reference NC01 Primary Assembly

    Range
    168011..173502
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010783353.1 → XP_010781655.1  cathepsin L1

    UniProtKB/TrEMBL
    A0A6I9P2H5
    Conserved Domains (2) summary
    smart00848
    Location:28 → 86
    Inhibitor_I29; Cathepsin propeptide inhibitor domain (I29)
    pfam00112
    Location:115 → 335
    Peptidase_C1; Papain family cysteine protease
Nucleotide Protein
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