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onecut1 one cut homeobox 1 [ Notothenia coriiceps (black rockcod) ]

Gene ID: 104953691, updated on 12-Mar-2024

Summary

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Gene symbol
onecut1
Gene description
one cut homeobox 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Notothenia coriiceps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Notothenia
Orthologs
zebrafish all
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Genomic context

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See onecut1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current NC01 (GCF_000735185.1) Unplaced Scaffold NW_011354819.1 (61353..67166, complement)

NW_011354819.1Genomic Context describing neighboring genes Neighboring gene cAMP-regulated phosphoprotein 19-A-like Neighboring gene atos homolog A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011354819.1 Unplaced Scaffold Reference NC01 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hepatocyte nuclear factor 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Notothenia coriiceps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NC01 Primary Assembly

Genomic

  1. NW_011354819.1 Reference NC01 Primary Assembly

    Range
    61353..67166 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010780666.1 → XP_010778968.1  hepatocyte nuclear factor 6 isoform X2

    UniProtKB/TrEMBL
    A0A6I9NVU6
    Conserved Domains (2) summary
    smart00389
    Location:372 → 427
    HOX; Homeodomain
    pfam02376
    Location:276 → 348
    CUT; CUT domain

  2. XM_010780665.1 → XP_010778967.1  hepatocyte nuclear factor 6 isoform X1

    UniProtKB/TrEMBL
    A0A6I9NRN7
    Conserved Domains (2) summary
    smart00389
    Location:377 → 432
    HOX; Homeodomain
    pfam02376
    Location:276 → 348
    CUT; CUT domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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