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apbb2b amyloid beta (A4) precursor protein-binding, family B, member 2b [ Notothenia coriiceps (black rockcod) ]

Gene ID: 104951596, updated on 12-Mar-2024

Summary

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Gene symbol
apbb2b
Gene description
amyloid beta (A4) precursor protein-binding, family B, member 2b
Gene type
protein coding
RefSeq status
MODEL
Organism
Notothenia coriiceps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Notothenia
Also known as
apbb2
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current NC01 (GCF_000735185.1) Unplaced Scaffold NW_011351701.1 (1177979..1259132, complement)

NW_011351701.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104951577 Neighboring gene ZFP91 zinc finger protein, atypical E3 ubiquitin ligase Neighboring gene phospholipase A1 member A Neighboring gene popeye domain containing 2 Neighboring gene cytochrome c oxidase copper chaperone Neighboring gene uncharacterized LOC104951592 Neighboring gene spindle and kinetochore associated complex subunit 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011351701.1 Unplaced Scaffold Reference NC01 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables amyloid-beta binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
amyloid beta A4 precursor protein-binding family B member 2
Names
amyloid beta precursor protein binding family B member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Notothenia coriiceps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NC01 Primary Assembly

Genomic

  1. NW_011351701.1 Reference NC01 Primary Assembly

    Range
    1177979..1259132 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010778290.1 → XP_010776592.1  amyloid beta A4 precursor protein-binding family B member 2 isoform X3

    UniProtKB/TrEMBL
    A0A6I9NJ57
    Conserved Domains (3) summary
    cd01271
    Location:728 → 854
    PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
    cd01272
    Location:564 → 701
    PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain
    pfam00397
    Location:362 → 390
    WW; WW domain

  2. XM_010778289.1 → XP_010776591.1  amyloid beta A4 precursor protein-binding family B member 2 isoform X2

    UniProtKB/TrEMBL
    A0A6I9NQ40
    Conserved Domains (3) summary
    cd01271
    Location:730 → 856
    PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
    cd01272
    Location:564 → 703
    PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain
    pfam00397
    Location:362 → 390
    WW; WW domain

  3. XM_010778288.1 → XP_010776590.1  amyloid beta A4 precursor protein-binding family B member 2 isoform X1

    UniProtKB/TrEMBL
    A0A6I9NPD4
    Conserved Domains (3) summary
    cd01271
    Location:731 → 857
    PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
    cd01272
    Location:564 → 703
    PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain
    pfam00397
    Location:362 → 390
    WW; WW domain

  4. XM_010778291.1 → XP_010776593.1  amyloid beta A4 precursor protein-binding family B member 2 isoform X4

    See identical proteins and their annotated locations for XP_010776593.1

    UniProtKB/TrEMBL
    A0A6I9NFU6
    Conserved Domains (1) summary
    cd01271
    Location:33 → 159
    PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain

  5. XM_010778292.1 → XP_010776594.1  amyloid beta A4 precursor protein-binding family B member 2 isoform X4

    See identical proteins and their annotated locations for XP_010776594.1

    UniProtKB/TrEMBL
    A0A6I9NFU6
    Conserved Domains (1) summary
    cd01271
    Location:33 → 159
    PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
Nucleotide Protein
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