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htra1a HtrA serine peptidase 1a [ Notothenia coriiceps (black rockcod) ]

Gene ID: 104946544, updated on 12-Mar-2024

Summary

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Gene symbol
htra1a
Gene description
HtrA serine peptidase 1a
Gene type
protein coding
RefSeq status
MODEL
Organism
Notothenia coriiceps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Notothenia
Also known as
htra1
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current NC01 (GCF_000735185.1) Unplaced Scaffold NW_011343884.1 (50341..73534, complement)

NW_011343884.1Genomic Context describing neighboring genes Neighboring gene wings apart-like protein homolog Neighboring gene wings apart-like protein homolog Neighboring gene pleckstrin homology domain containing A1 Neighboring gene phosphatase and actin regulator 2 Neighboring gene uncharacterized LOC104946547

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011343884.1 Unplaced Scaffold Reference NC01 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in programmed cell death IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine protease HTRA1
Names
HtrA serine peptidase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Notothenia coriiceps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NC01 Primary Assembly

Genomic

  1. NW_011343884.1 Reference NC01 Primary Assembly

    Range
    50341..73534 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010772395.1 → XP_010770697.1  serine protease HTRA1

    UniProtKB/TrEMBL
    A0A6I9N282
    Conserved Domains (5) summary
    smart00280
    Location:106 → 151
    KAZAL; Kazal type serine protease inhibitors
    COG0265
    Location:157 → 476
    DegQ; Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
    cd00987
    Location:378 → 469
    PDZ_serine_protease; PDZ domain of trypsin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind ...
    pfam00219
    Location:29 → 85
    IGFBP; Insulin-like growth factor binding protein
    pfam13365
    Location:200 → 338
    Trypsin_2; Trypsin-like peptidase domain
Nucleotide Protein
Heading Accession and Version

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