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ssh1a slingshot protein phosphatase 1a [ Larimichthys crocea (large yellow croaker) ]

Gene ID: 104937255, updated on 12-Mar-2024

Summary

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Gene symbol
ssh1a
Gene description
slingshot protein phosphatase 1a
Locus tag
EH28_21300
See related
Ensembl:ENSLCRG00005016258
Gene type
protein coding
RefSeq status
MODEL
Organism
Larimichthys crocea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Sciaenidae; Larimichthys
Also known as
ssh1
Orthologs
human zebrafish all
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Genomic context

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See ssh1a in Genome Data Viewer
Location:
chromosome: III
Exon count:
17
Annotation release Status Assembly Chr Location
102 current L_crocea_2.0 (GCF_000972845.2) III NC_040013.1 (28464159..28485277)
101 previous assembly L_crocea_1.0 (GCF_000972845.1) Unplaced Scaffold NW_017608003.1 (1177858..1198847)

Chromosome III - NC_040013.1Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 30 Neighboring gene SV2 related protein a Neighboring gene D-amino acid oxidase Neighboring gene uncharacterized LOC113744216 Neighboring gene coronin 1C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein tyrosine/serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of actin filament polymerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein phosphatase Slingshot homolog 1
Names
Protein phosphatase Slingshot
slingshot protein phosphatase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Larimichthys crocea Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference L_crocea_2.0 Primary Assembly

Genomic

  1. NC_040013.1 Reference L_crocea_2.0 Primary Assembly

    Range
    28464159..28485277
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019275880.2 → XP_019131425.2  protein phosphatase Slingshot homolog 1 isoform X1

    Related
    ENSLCRP00005042388.1, ENSLCRT00005043129.1

  2. XM_019275885.2 → XP_019131430.2  protein phosphatase Slingshot homolog 1 isoform X2

    Related
    ENSLCRP00005042406.1, ENSLCRT00005043147.1

RNA

  1. XR_003461435.1 RNA Sequence

    Related
    ENSLCRT00005043211.1
Nucleotide Protein
Heading Accession and Version

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