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adamtsl2 ADAMTS-like 2 [ Larimichthys crocea (large yellow croaker) ]

Gene ID: 104935213, updated on 12-Mar-2024

Summary

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Gene symbol
adamtsl2
Gene description
ADAMTS-like 2
Locus tag
EH28_06110
Gene type
protein coding
RefSeq status
MODEL
Organism
Larimichthys crocea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Sciaenidae; Larimichthys
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: III
Exon count:
20
Annotation release Status Assembly Chr Location
102 current L_crocea_2.0 (GCF_000972845.2) III NC_040013.1 (41375660..41419443)
101 previous assembly L_crocea_1.0 (GCF_000972845.1) Unplaced Scaffold NW_017609241.1 (82420..104930)

Chromosome III - NC_040013.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 2 member 8 Neighboring gene tetratricopeptide repeat domain 16 Neighboring gene myomaker, myoblast fusion factor Neighboring gene protein FAM163B-like Neighboring gene natterin-3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ADAMTS-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Larimichthys crocea Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference L_crocea_2.0 Primary Assembly

Genomic

  1. NC_040013.1 Reference L_crocea_2.0 Primary Assembly

    Range
    41375660..41419443
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027278507.1 → XP_027134308.1  ADAMTS-like protein 2 isoform X2

    Conserved Domains (4) summary
    smart00209
    Location:55 → 111
    TSP1; Thrombospondin type 1 repeats
    pfam05986
    Location:221 → 335
    ADAM_spacer1; ADAM-TS Spacer 1
    cl15278
    Location:737 → 782
    TSP_1; Thrombospondin type 1 domain
    pfam08686
    Location:909 → 940
    PLAC; PLAC (protease and lacunin) domain

  2. XM_019272315.2 → XP_019127860.1  ADAMTS-like protein 2 isoform X1

Nucleotide Protein
Heading Accession and Version

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