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atg16l1 ATG16 autophagy related 16-like 1 (S. cerevisiae) [ Larimichthys crocea (large yellow croaker) ]

Gene ID: 104932701, updated on 12-Mar-2024

Summary

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Gene symbol
atg16l1
Gene description
ATG16 autophagy related 16-like 1 (S. cerevisiae)
Locus tag
EH28_16963
See related
Ensembl:ENSLCRG00005000242
Gene type
protein coding
RefSeq status
MODEL
Organism
Larimichthys crocea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Sciaenidae; Larimichthys
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: VII
Exon count:
22
Annotation release Status Assembly Chr Location
102 current L_crocea_2.0 (GCF_000972845.2) VII NC_040017.1 (18926435..18940652)
101 previous assembly L_crocea_1.0 (GCF_000972845.1) Unplaced Scaffold NW_017608400.1 (76601..89895)

Chromosome VII - NC_040017.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1, regulatory (inhibitor) subunit 14Ab Neighboring gene uncharacterized LOC109138967 Neighboring gene serine peptidase inhibitor, Kunitz type, 2 Neighboring gene small Cajal body-specific RNA 6 Neighboring gene small Cajal body-specific RNA 6 Neighboring gene small Cajal body-specific RNA 6 Neighboring gene S-arrestin Neighboring gene diacylglycerol kinase delta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative stranded viral RNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in autophagosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
autophagy-related protein 16-1
Names
Autophagy-related protein 16-1
autophagy related 16 like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Larimichthys crocea Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference L_crocea_2.0 Primary Assembly

Genomic

  1. NC_040017.1 Reference L_crocea_2.0 Primary Assembly

    Range
    18926435..18940652
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027280610.1 → XP_027136411.1  autophagy-related protein 16-1 isoform X4

    UniProtKB/TrEMBL
    A0A6G0ITZ3
    Related
    ENSLCRP00005000639.1, ENSLCRT00005000671.1

  2. XM_010747997.3 → XP_010746299.1  autophagy-related protein 16-1 isoform X1

    UniProtKB/TrEMBL
    A0A6G0ITZ3
    Related
    ENSLCRP00005000476.1, ENSLCRT00005000506.1
    Conserved Domains (6) summary
    COG2319
    Location:363 → 657
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:367 → 657
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam04778
    Location:132 → 273
    LMP; LMP repeated region
    pfam08614
    Location:52 → 242
    ATG16; Autophagy protein 16 (ATG16)
    pfam13863
    Location:115 → 199
    DUF4200; Domain of unknown function (DUF4200)
    sd00039
    Location:378 → 416
    7WD40; WD40 repeat [structural motif]

  3. XM_010747998.3 → XP_010746300.1  autophagy-related protein 16-1 isoform X2

    UniProtKB/TrEMBL
    A0A6G0ITZ3
    Related
    ENSLCRP00005000501.1, ENSLCRT00005000532.1
    Conserved Domains (6) summary
    COG2319
    Location:349 → 643
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:353 → 643
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam04778
    Location:132 → 273
    LMP; LMP repeated region
    pfam08614
    Location:52 → 242
    ATG16; Autophagy protein 16 (ATG16)
    pfam13863
    Location:115 → 199
    DUF4200; Domain of unknown function (DUF4200)
    sd00039
    Location:364 → 402
    7WD40; WD40 repeat [structural motif]

  4. XM_010747999.3 → XP_010746301.1  autophagy-related protein 16-1 isoform X3

    See identical proteins and their annotated locations for XP_010746301.1

    UniProtKB/TrEMBL
    A0A6G0ITZ3
    Related
    ENSLCRP00005000532.1, ENSLCRT00005000563.1
    Conserved Domains (6) summary
    COG2319
    Location:348 → 642
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:352 → 642
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam08614
    Location:52 → 242
    ATG16; Autophagy protein 16 (ATG16)
    pfam08647
    Location:188 → 266
    BRE1; BRE1 E3 ubiquitin ligase
    pfam13863
    Location:115 → 199
    DUF4200; Domain of unknown function (DUF4200)
    sd00039
    Location:363 → 401
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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