U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

trim71 tripartite motif containing 71, E3 ubiquitin protein ligase [ Larimichthys crocea (large yellow croaker) ]

Gene ID: 104931805, updated on 12-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
trim71
Gene description
tripartite motif containing 71, E3 ubiquitin protein ligase
Locus tag
EH28_03764
See related
Ensembl:ENSLCRG00005008552
Gene type
protein coding
RefSeq status
MODEL
Organism
Larimichthys crocea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Sciaenidae; Larimichthys
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See trim71 in Genome Data Viewer
Location:
chromosome: XIII
Exon count:
7
Annotation release Status Assembly Chr Location
102 current L_crocea_2.0 (GCF_000972845.2) XIII NC_040023.1 (2030607..2059140, complement)
101 previous assembly L_crocea_1.0 (GCF_000972845.1) Unplaced Scaffold NW_017609734.1 (242871..269797)

Chromosome XIII - NC_040023.1Genomic Context describing neighboring genes Neighboring gene trafficking kinesin protein 1 Neighboring gene cholecystokinin b Neighboring gene testis and ovary specific TOPAZ 1 Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase ABHD5

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
E3 ubiquitin-protein ligase TRIM71
Names
Tripartite motif-containing protein 71

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Larimichthys crocea Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference L_crocea_2.0 Primary Assembly

Genomic

  1. NC_040023.1 Reference L_crocea_2.0 Primary Assembly

    Range
    2030607..2059140 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010746892.3 → XP_010745194.1  E3 ubiquitin-protein ligase TRIM71

    See identical proteins and their annotated locations for XP_010745194.1

    UniProtKB/TrEMBL
    A0A0F8ACM3
    Related
    ENSLCRP00005021028.1, ENSLCRT00005021440.1
    Conserved Domains (6) summary
    smart00502
    Location:284 → 408
    BBC; B-Box C-terminal domain
    smart00557
    Location:449 → 544
    IG_FLMN; Filamin-type immunoglobulin domains
    cd14954
    Location:547 → 831
    NHL_TRIM71_like; NHL repeat domain of the tripartite motif-containing protein 71 (TRIM71) and related proteins
    cd16589
    Location:8 → 83
    RING-HC_TRIM71_C-VII; RING finger, HC subclass, found in tripartite motif-containing protein 71 (TRIM71) and similar proteins
    cd19796
    Location:237 → 284
    Bbox2_TRIM71_C-VII; B-box-type 2 zinc finger found in tripartite motif-containing protein 71 (TRIM71) and similar proteins
    cd19812
    Location:152 → 193
    Bbox1_TRIM71_C-VII; B-box-type 1 zinc finger found in tripartite motif-containing protein 71 (TRIM71) and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.