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tnfsf13b TNF superfamily member 13b [ Larimichthys crocea (large yellow croaker) ]

Gene ID: 104928453, updated on 12-Mar-2024

Summary

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Gene symbol
tnfsf13b
Gene description
TNF superfamily member 13b
Locus tag
EH28_10899
See related
Ensembl:ENSLCRG00005015330
Gene type
protein coding
RefSeq status
MODEL
Organism
Larimichthys crocea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Sciaenidae; Larimichthys
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: XVIII
Exon count:
6
Annotation release Status Assembly Chr Location
102 current L_crocea_2.0 (GCF_000972845.2) XVIII NC_040028.1 (17273093..17277044)
101 previous assembly L_crocea_1.0 (GCF_000972845.1) Unplaced Scaffold NW_017608407.1 (356656..361004)

Chromosome XVIII - NC_040028.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein FAM155A Neighboring gene abhydrolase domain containing 13 Neighboring gene myosin XVI Neighboring gene insulin receptor substrate 2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables receptor ligand activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor ligand superfamily member 13B
Names
Tumor necrosis factor ligand superfamily member 13B
tumor necrosis factor superfamily member 13b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Larimichthys crocea Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference L_crocea_2.0 Primary Assembly

Genomic

  1. NC_040028.1 Reference L_crocea_2.0 Primary Assembly

    Range
    17273093..17277044
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010742744.3 → XP_010741046.3  tumor necrosis factor ligand superfamily member 13B isoform X2

    UniProtKB/TrEMBL
    A0A6G0J6W6
    Related
    ENSLCRP00005039645.1, ENSLCRT00005040359.1
    Conserved Domains (1) summary
    cl00147
    Location:117 → 258
    TNF; Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal ...

  2. XM_010742743.3 → XP_010741045.3  tumor necrosis factor ligand superfamily member 13B isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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