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tet2 tet methylcytosine dioxygenase 2 [ Larimichthys crocea (large yellow croaker) ]

Gene ID: 104926967, updated on 12-Mar-2024

Summary

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Gene symbol
tet2
Gene description
tet methylcytosine dioxygenase 2
Locus tag
EH28_21778
See related
Ensembl:ENSLCRG00005005534
Gene type
protein coding
RefSeq status
MODEL
Organism
Larimichthys crocea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Sciaenidae; Larimichthys
Orthologs
human zebrafish all
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Genomic context

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See tet2 in Genome Data Viewer
Location:
chromosome: X
Exon count:
11
Annotation release Status Assembly Chr Location
102 current L_crocea_2.0 (GCF_000972845.2) X NC_040020.1 (3455446..3485657)
101 previous assembly L_crocea_1.0 (GCF_000972845.1) Unplaced Scaffold NW_017609889.1 (1381116..1411084)

Chromosome X - NC_040020.1Genomic Context describing neighboring genes Neighboring gene cyclin-dependent kinase 4 inhibitor B-like Neighboring gene CXXC finger 4 Neighboring gene Rho guanine nucleotide exchange factor (GEF) 38 Neighboring gene inorganic pyrophosphatase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5-methylcytosine dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 5-methylcytosine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in myeloid cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oxidative demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
methylcytosine dioxygenase TET2
Names
Methylcytosine dioxygenase TET2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Larimichthys crocea Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference L_crocea_2.0 Primary Assembly

Genomic

  1. NC_040020.1 Reference L_crocea_2.0 Primary Assembly

    Range
    3455446..3485657
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010740935.3 → XP_010739237.3  methylcytosine dioxygenase TET2

    UniProtKB/TrEMBL
    A0A6G0J8Z3

  2. XM_027282866.1 → XP_027138667.1  methylcytosine dioxygenase TET2

    UniProtKB/TrEMBL
    A0A6G0J8Z3
    Related
    ENSLCRP00005012607.1, ENSLCRT00005012924.1
Nucleotide Protein
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