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LOC104921672 HIC ZBTB transcriptional repressor 2 [ Larimichthys crocea (large yellow croaker) ]

Gene ID: 104921672, updated on 9-Nov-2023

Summary

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Gene symbol
LOC104921672
Gene description
HIC ZBTB transcriptional repressor 2
See related
Ensembl:ENSLCRG00005003115
Gene type
protein coding
RefSeq status
MODEL
Organism
Larimichthys crocea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Sciaenidae; Larimichthys
Also known as
hic2
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Genomic context

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See LOC104921672 in Genome Data Viewer
Location:
chromosome: III
Exon count:
2
Annotation release Status Assembly Chr Location
102 current L_crocea_2.0 (GCF_000972845.2) III NC_040013.1 (36906776..36924730, complement)
101 previous assembly L_crocea_1.0 (GCF_000972845.1) Unplaced Scaffold NW_017608619.1 (135723..150197)

Chromosome III - NC_040013.1Genomic Context describing neighboring genes Neighboring gene synaptosome associated protein 29 Neighboring gene phosphatidylinositol 4-kinase, catalytic, alpha b Neighboring gene serpin peptidase inhibitor, clade D (heparin cofactor), member 1 Neighboring gene C5a anaphylatoxin chemotactic receptor 1 Neighboring gene protease-associated domain-containing protein 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypermethylated in cancer 2 protein
Names
hypermethylated in cancer 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Larimichthys crocea Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference L_crocea_2.0 Primary Assembly

Genomic

  1. NC_040013.1 Reference L_crocea_2.0 Primary Assembly

    Range
    36906776..36924730 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019264460.2 → XP_019120005.1  hypermethylated in cancer 2 protein

    UniProtKB/TrEMBL
    A0A6G0IKW8
    Related
    ENSLCRP00005006128.1, ENSLCRT00005006356.1
    Conserved Domains (4) summary
    sd00017
    Location:505 → 525
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:503 → 525
    zf-C2H2; Zinc finger, C2H2 type
    cl38908
    Location:3 → 122
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    pfam13465
    Location:545 → 570
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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