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chfr checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase [ Larimichthys crocea (large yellow croaker) ]

Gene ID: 104920866, updated on 12-Mar-2024

Summary

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Gene symbol
chfr
Gene description
checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase
Locus tag
EH28_21901
See related
Ensembl:ENSLCRG00005014864
Gene type
protein coding
RefSeq status
MODEL
Organism
Larimichthys crocea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Sciaenidae; Larimichthys
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: III
Exon count:
18
Annotation release Status Assembly Chr Location
102 current L_crocea_2.0 (GCF_000972845.2) III NC_040013.1 (48185886..48196811)
101 previous assembly L_crocea_1.0 (GCF_000972845.1) Unplaced Scaffold NW_017608564.1 (1124179..1135124, complement)

Chromosome III - NC_040013.1Genomic Context describing neighboring genes Neighboring gene fibrosin-like 1 Neighboring gene ATP-dependent DNA helicase PIF1-like Neighboring gene uncharacterized LOC113745658 Neighboring gene flocculation protein FLO11 Neighboring gene uncharacterized LOC113744449 Neighboring gene golgin A3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitotic cell cycle checkpoint signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase CHFR

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Larimichthys crocea Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference L_crocea_2.0 Primary Assembly

Genomic

  1. NC_040013.1 Reference L_crocea_2.0 Primary Assembly

    Range
    48185886..48196811
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019263384.2 → XP_019118929.1  E3 ubiquitin-protein ligase CHFR

    UniProtKB/TrEMBL
    A0A6G0IJU4
    Related
    ENSLCRP00005038329.1, ENSLCRT00005039028.1
    Conserved Domains (3) summary
    TIGR03354
    Location:27 → 210
    VI_FHA; type VI secretion system FHA domain protein
    cd16503
    Location:257 → 300
    RING-HC_CHFR; RING finger, HC subclass, found in checkpoint with forkhead and RING finger domains protein (CHFR)
    pfam00498
    Location:29 → 96
    FHA; FHA domain
Nucleotide Protein
Heading Accession and Version

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