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Hdac9 histone deacetylase 9 [ Fukomys damarensis (Damara mole-rat) ]

Gene ID: 104875649, updated on 12-Mar-2024

Summary

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Gene symbol
Hdac9
Gene description
histone deacetylase 9
Locus tag
H920_13482
See related
Ensembl:ENSFDAG00000020997
Gene type
protein coding
RefSeq status
MODEL
Organism
Fukomys damarensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
33
Annotation release Status Assembly Chr Location
102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900916.1 (20567289..21491371)
101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011046026.1 (307201..1231298, complement)

NW_022900916.1Genomic Context describing neighboring genes Neighboring gene sorting nexin 13 Neighboring gene phosphoribosyl pyrophosphate synthetase 1 like 1 Neighboring gene U6atac minor spliceosomal RNA Neighboring gene uncharacterized LOC104875648 Neighboring gene 5S ribosomal RNA Neighboring gene shugoshin 1-like Neighboring gene twist family bHLH transcription factor 1 Neighboring gene Fer3 like bHLH transcription factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DMR_v1.0_HiC Primary Assembly

Genomic

  1. NW_022900916.1 Reference DMR_v1.0_HiC Primary Assembly

    Range
    20567289..21491371
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033757109.1 → XP_033613000.1  histone deacetylase 9 isoform X1

    UniProtKB/TrEMBL
    A0A091CZ58
    Conserved Domains (2) summary
    cd10163
    Location:59 → 148
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    cd11681
    Location:679 → 1056
    HDAC_classIIa; Histone deacetylases, class IIa

  2. XM_033757117.1 → XP_033613008.1  histone deacetylase 9 isoform X3

    Conserved Domains (1) summary
    cl25407
    Location:38 → 124
    ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

  3. XM_033757124.1 → XP_033613015.1  histone deacetylase 9 isoform X5

    Conserved Domains (1) summary
    cl25407
    Location:38 → 124
    ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

  4. XM_033757114.1 → XP_033613005.1  histone deacetylase 9 isoform X2

    Conserved Domains (1) summary
    cd10163
    Location:38 → 127
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

  5. XM_033757119.1 → XP_033613010.1  histone deacetylase 9 isoform X4

    Conserved Domains (1) summary
    cd10163
    Location:38 → 127
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
Nucleotide Protein
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