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Ndc80 NDC80 kinetochore complex component [ Fukomys damarensis (Damara mole-rat) ]

Gene ID: 104872435, updated on 12-Mar-2024

Summary

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Gene symbol
Ndc80
Gene description
NDC80 kinetochore complex component
Locus tag
H920_11507
See related
Ensembl:ENSFDAG00000002149
Gene type
protein coding
RefSeq status
MODEL
Organism
Fukomys damarensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900942.1 (62096973..62137348)
101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011045626.1 (5237142..5275183, complement)

NW_022900942.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104872436 Neighboring gene importin subunit alpha-1-like Neighboring gene methyltransferase 4, N6-adenosine Neighboring gene uncharacterized LOC104872432 Neighboring gene uncharacterized LOC117283736 Neighboring gene formylglycine-generating enzyme-like Neighboring gene structural maintenance of chromosomes flexible hinge domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in attachment of mitotic spindle microtubules to kinetochore IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Ndc80 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kinetochore protein NDC80 homolog
Names
Kinetochore protein NDC80 like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DMR_v1.0_HiC Primary Assembly

Genomic

  1. NW_022900942.1 Reference DMR_v1.0_HiC Primary Assembly

    Range
    62096973..62137348
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033757379.1 → XP_033613270.1  kinetochore protein NDC80 homolog isoform X2

    UniProtKB/TrEMBL
    A0A091D7Q2
    Conserved Domains (2) summary
    COG5185
    Location:1 → 578
    HEC1; Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning]
    pfam03801
    Location:51 → 206
    Ndc80_HEC; HEC/Ndc80p family

  2. XM_010638688.2 → XP_010636990.1  kinetochore protein NDC80 homolog isoform X1

    See identical proteins and their annotated locations for XP_010636990.1

    UniProtKB/TrEMBL
    A0A091D7Q2
    Related
    ENSFDAP00000014727.1
    Conserved Domains (4) summary
    COG5185
    Location:1 → 613
    HEC1; Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning]
    TIGR04527
    Location:235 → 385
    mycoplas_twoTM; two transmembrane protein
    pfam03801
    Location:51 → 205
    Ndc80_HEC; HEC/Ndc80p family
    cl01090
    Location:482 → 531
    SlyX; SlyX

  3. XM_010638689.2 → XP_010636991.1  kinetochore protein NDC80 homolog isoform X1

    See identical proteins and their annotated locations for XP_010636991.1

    UniProtKB/TrEMBL
    A0A091D7Q2
    Conserved Domains (4) summary
    COG5185
    Location:1 → 613
    HEC1; Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning]
    TIGR04527
    Location:235 → 385
    mycoplas_twoTM; two transmembrane protein
    pfam03801
    Location:51 → 205
    Ndc80_HEC; HEC/Ndc80p family
    cl01090
    Location:482 → 531
    SlyX; SlyX
Nucleotide Protein
Heading Accession and Version

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