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Sytl1 synaptotagmin like 1 [ Fukomys damarensis (Damara mole-rat) ]

Gene ID: 104868136, updated on 12-Mar-2024

Summary

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Gene symbol
Sytl1
Gene description
synaptotagmin like 1
Locus tag
H920_00852
See related
Ensembl:ENSFDAG00000015899
Gene type
protein coding
RefSeq status
MODEL
Organism
Fukomys damarensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
Orthologs
human mouse all
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Genomic context

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See Sytl1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900935.1 (19210889..19219274, complement)
101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011043357.1 (1944847..1953432, complement)

NW_022900935.1Genomic Context describing neighboring genes Neighboring gene ficolin 3 Neighboring gene mitogen-activated protein kinase kinase kinase 6 Neighboring gene uncharacterized LOC117287331 Neighboring gene transmembrane protein 222 Neighboring gene U2 spliceosomal RNA Neighboring gene WD and tetratricopeptide repeats 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables neurexin family protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in exocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptotagmin-like protein 1
Names
Synaptotagmin-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DMR_v1.0_HiC Primary Assembly

Genomic

  1. NW_022900935.1 Reference DMR_v1.0_HiC Primary Assembly

    Range
    19210889..19219274 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010632741.3 → XP_010631043.1  synaptotagmin-like protein 1

    See identical proteins and their annotated locations for XP_010631043.1

    UniProtKB/TrEMBL
    A0A091E548
    Related
    ENSFDAP00000007371.1
    Conserved Domains (3) summary
    cd04020
    Location:414 → 570
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cl14603
    Location:283 → 401
    C2; C2 domain
    cl22851
    Location:35 → 82
    PHD_SF; PHD finger superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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