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Usp13 ubiquitin specific peptidase 13 [ Fukomys damarensis (Damara mole-rat) ]

Gene ID: 104867902, updated on 12-Mar-2024

Summary

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Gene symbol
Usp13
Gene description
ubiquitin specific peptidase 13
Locus tag
H920_08818
See related
Ensembl:ENSFDAG00000017485
Gene type
protein coding
RefSeq status
MODEL
Organism
Fukomys damarensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
Orthologs
human mouse all
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Genomic context

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See Usp13 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900924.1 (39823892..39933435)
101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011045175.1 (9543755..9654149)

NW_022900924.1Genomic Context describing neighboring genes Neighboring gene pre-mRNA-splicing factor SPF27-like Neighboring gene mitochondrial ribosomal protein L47 Neighboring gene NADH:ubiquinone oxidoreductase subunit B5 Neighboring gene probable UDP-sugar transporter protein SLC35A4 Neighboring gene peroxisomal biogenesis factor 5 like Neighboring gene uncharacterized LOC117285714 Neighboring gene uncharacterized LOC117285715

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 13
Names
Ubiquitin carboxyl-terminal hydrolase 13
ubiquitin specific peptidase 13 (isopeptidase T-3)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DMR_v1.0_HiC Primary Assembly

Genomic

  1. NW_022900924.1 Reference DMR_v1.0_HiC Primary Assembly

    Range
    39823892..39933435
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010632461.3 → XP_010630763.1  ubiquitin carboxyl-terminal hydrolase 13

    Related
    ENSFDAP00000009468.1
    Conserved Domains (5) summary
    COG5207
    Location:40 → 839
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02658
    Location:318 → 591
    Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    cd14384
    Location:633 → 681
    UBA1_UBP13; UBA1 domain found in ubiquitin carboxyl-terminal hydrolase 13 (UBP13)
    cd14386
    Location:709 → 750
    UBA2_UBP5; UBA2 domain found in ubiquitin carboxyl-terminal hydrolase 5 (UBP5)
    pfam02148
    Location:192 → 265
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
Nucleotide Protein
Heading Accession and Version

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