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Lrrfip2 LRR binding FLII interacting protein 2 [ Fukomys damarensis (Damara mole-rat) ]

Gene ID: 104865905, updated on 12-Mar-2024

Summary

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Gene symbol
Lrrfip2
Gene description
LRR binding FLII interacting protein 2
Locus tag
H920_07675
See related
Ensembl:ENSFDAG00000014737
Gene type
protein coding
RefSeq status
MODEL
Organism
Fukomys damarensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900940.1 (17974573..18086227)
101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011044965.1 (4193519..4305178, complement)

NW_022900940.1Genomic Context describing neighboring genes Neighboring gene APRG1 tumor suppressor candidate Neighboring gene golgin A4 Neighboring gene U6 spliceosomal RNA Neighboring gene mutL homolog 1 Neighboring gene small nucleolar RNA U3 Neighboring gene EPM2A interacting protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat flightless-interacting protein 2
Names
Leucine-rich repeat flightless-interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DMR_v1.0_HiC Primary Assembly

Genomic

  1. NW_022900940.1 Reference DMR_v1.0_HiC Primary Assembly

    Range
    17974573..18086227
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019208260.2 → XP_019063805.1  leucine-rich repeat flightless-interacting protein 2 isoform X1

    Conserved Domains (3) summary
    pfam04111
    Location:598 → 693
    APG6; Autophagy protein Apg6
    pfam04156
    Location:371 → 494
    IncA; IncA protein
    pfam09738
    Location:264 → 618
    LRRFIP; LRRFIP family

  2. XM_019208258.2 → XP_019063803.1  leucine-rich repeat flightless-interacting protein 2 isoform X1

    Conserved Domains (3) summary
    pfam04111
    Location:598 → 693
    APG6; Autophagy protein Apg6
    pfam04156
    Location:371 → 494
    IncA; IncA protein
    pfam09738
    Location:264 → 618
    LRRFIP; LRRFIP family

  3. XM_019208266.2 → XP_019063811.1  leucine-rich repeat flightless-interacting protein 2 isoform X8

    Conserved Domains (2) summary
    pfam04111
    Location:567 → 662
    APG6; Autophagy protein Apg6
    pfam09738
    Location:264 → 587
    LRRFIP; LRRFIP family

  4. XM_010629687.3 → XP_010627989.1  leucine-rich repeat flightless-interacting protein 2 isoform X4

    Conserved Domains (1) summary
    pfam09738
    Location:261 → 615
    DUF2051; Double stranded RNA binding protein (DUF2051)

  5. XM_019208261.2 → XP_019063806.1  leucine-rich repeat flightless-interacting protein 2 isoform X2

    Conserved Domains (3) summary
    pfam04111
    Location:597 → 692
    APG6; Autophagy protein Apg6
    pfam04156
    Location:370 → 493
    IncA; IncA protein
    pfam09738
    Location:263 → 617
    LRRFIP; LRRFIP family

  6. XM_019208259.2 → XP_019063804.1  leucine-rich repeat flightless-interacting protein 2 isoform X1

    Conserved Domains (3) summary
    pfam04111
    Location:598 → 693
    APG6; Autophagy protein Apg6
    pfam04156
    Location:371 → 494
    IncA; IncA protein
    pfam09738
    Location:264 → 618
    LRRFIP; LRRFIP family

  7. XM_019208268.2 → XP_019063813.1  leucine-rich repeat flightless-interacting protein 2 isoform X10

    Conserved Domains (2) summary
    pfam04111
    Location:564 → 659
    APG6; Autophagy protein Apg6
    pfam09738
    Location:264 → 584
    LRRFIP; LRRFIP family

  8. XM_019208270.2 → XP_019063815.1  leucine-rich repeat flightless-interacting protein 2 isoform X14

  9. XM_019208264.2 → XP_019063809.1  leucine-rich repeat flightless-interacting protein 2 isoform X6

    Conserved Domains (3) summary
    pfam04111
    Location:574 → 669
    APG6; Autophagy protein Apg6
    pfam04156
    Location:347 → 470
    IncA; IncA protein
    pfam09738
    Location:264 → 594
    LRRFIP; LRRFIP family

  10. XM_019208269.2 → XP_019063814.1  leucine-rich repeat flightless-interacting protein 2 isoform X12

    Conserved Domains (2) summary
    pfam04111
    Location:540 → 635
    APG6; Autophagy protein Apg6
    pfam09738
    Location:264 → 560
    LRRFIP; LRRFIP family

  11. XM_019208271.2 → XP_019063816.1  leucine-rich repeat flightless-interacting protein 2 isoform X15

    Conserved Domains (2) summary
    pfam04111
    Location:509 → 604
    APG6; Autophagy protein Apg6
    pfam09738
    Location:264 → 529
    LRRFIP; LRRFIP family

  12. XM_033756975.1 → XP_033612866.1  leucine-rich repeat flightless-interacting protein 2 isoform X11

    Conserved Domains (2) summary
    pfam09738
    Location:261 → 560
    LRRFIP; LRRFIP family
    pfam11932
    Location:576 → 635
    DUF3450; Protein of unknown function (DUF3450)

  13. XM_019208267.2 → XP_019063812.1  leucine-rich repeat flightless-interacting protein 2 isoform X9

    Conserved Domains (3) summary
    pfam04111
    Location:565 → 660
    APG6; Autophagy protein Apg6
    pfam04156
    Location:338 → 461
    IncA; IncA protein
    pfam09738
    Location:231 → 585
    LRRFIP; LRRFIP family

  14. XM_033756976.1 → XP_033612867.1  leucine-rich repeat flightless-interacting protein 2 isoform X13

    Conserved Domains (2) summary
    pfam09738
    Location:231 → 554
    LRRFIP; LRRFIP family
    pfam11932
    Location:570 → 629
    DUF3450; Protein of unknown function (DUF3450)

  15. XM_019208265.2 → XP_019063810.1  leucine-rich repeat flightless-interacting protein 2 isoform X7

    Conserved Domains (3) summary
    pfam04111
    Location:573 → 668
    APG6; Autophagy protein Apg6
    pfam04156
    Location:346 → 469
    IncA; IncA protein
    pfam09738
    Location:239 → 593
    LRRFIP; LRRFIP family

  16. XM_019208263.2 → XP_019063808.1  leucine-rich repeat flightless-interacting protein 2 isoform X5

    Conserved Domains (3) summary
    pfam04111
    Location:583 → 678
    APG6; Autophagy protein Apg6
    pfam04156
    Location:356 → 479
    IncA; IncA protein
    pfam09738
    Location:249 → 603
    LRRFIP; LRRFIP family

  17. XM_033756977.1 → XP_033612868.1  leucine-rich repeat flightless-interacting protein 2 isoform X16

    UniProtKB/TrEMBL
    A0A091DFL1
    Conserved Domains (2) summary
    pfam09738
    Location:47 → 414
    LRRFIP; LRRFIP family
    pfam11932
    Location:431 → 489
    DUF3450; Protein of unknown function (DUF3450)

  18. XM_033756979.1 → XP_033612870.1  leucine-rich repeat flightless-interacting protein 2 isoform X18

    Conserved Domains (2) summary
    pfam09738
    Location:47 → 383
    LRRFIP; LRRFIP family
    pfam11932
    Location:400 → 458
    DUF3450; Protein of unknown function (DUF3450)

  19. XM_010629685.3 → XP_010627987.1  leucine-rich repeat flightless-interacting protein 2 isoform X20

    Related
    ENSFDAP00000005811.1
    Conserved Domains (1) summary
    pfam09738
    Location:47 → 349
    DUF2051; Double stranded RNA binding protein (DUF2051)

  20. XM_033756978.1 → XP_033612869.1  leucine-rich repeat flightless-interacting protein 2 isoform X17

    UniProtKB/TrEMBL
    A0A091DFL1
    Conserved Domains (2) summary
    pfam09738
    Location:47 → 390
    LRRFIP; LRRFIP family
    pfam11932
    Location:407 → 465
    DUF3450; Protein of unknown function (DUF3450)

  21. XM_033756980.1 → XP_033612871.1  leucine-rich repeat flightless-interacting protein 2 isoform X19

    Conserved Domains (2) summary
    pfam09738
    Location:47 → 359
    LRRFIP; LRRFIP family
    pfam11932
    Location:375 → 434
    DUF3450; Protein of unknown function (DUF3450)

  22. XM_010629686.3 → XP_010627988.1  leucine-rich repeat flightless-interacting protein 2 isoform X21

    Related
    ENSFDAP00000005814.1
    Conserved Domains (1) summary
    pfam09738
    Location:47 → 325
    DUF2051; Double stranded RNA binding protein (DUF2051)

  23. XM_019208262.2 → XP_019063807.2  leucine-rich repeat flightless-interacting protein 2 isoform X3

    Conserved Domains (2) summary
    pfam09738
    Location:244 → 598
    LRRFIP; LRRFIP family
    pfam11932
    Location:614 → 673
    DUF3450; Protein of unknown function (DUF3450)
Nucleotide Protein
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