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Kdm3a lysine demethylase 3A [ Fukomys damarensis (Damara mole-rat) ]

Gene ID: 104863284, updated on 12-Mar-2024

Summary

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Gene symbol
Kdm3a
Gene description
lysine demethylase 3A
Locus tag
H920_05962
See related
Ensembl:ENSFDAG00000015007
Gene type
protein coding
RefSeq status
MODEL
Organism
Fukomys damarensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900914.1 (60533060..60579190)
101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011044751.1 (1031325..1080415, complement)

NW_022900914.1Genomic Context describing neighboring genes Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4-like Neighboring gene 40S ribosomal protein S15a-like Neighboring gene charged multivesicular body protein 3 Neighboring gene required for meiotic nuclear division 5 homolog A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K9 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 3A
Names
Lysine-specific demethylase 3A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DMR_v1.0_HiC Primary Assembly

Genomic

  1. NW_022900914.1 Reference DMR_v1.0_HiC Primary Assembly

    Range
    60533060..60579190
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010625654.3 → XP_010623956.1  lysine-specific demethylase 3A isoform X1

    See identical proteins and their annotated locations for XP_010623956.1

    UniProtKB/TrEMBL
    A0A091DKJ6
    Related
    ENSFDAP00000006178.1
    Conserved Domains (2) summary
    smart00558
    Location:1062 → 1132
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cl21464
    Location:1149 → 1262
    cupin_like; Conserved domain found in cupin and related proteins

  2. XM_010625655.3 → XP_010623957.1  lysine-specific demethylase 3A isoform X1

    See identical proteins and their annotated locations for XP_010623957.1

    UniProtKB/TrEMBL
    A0A091DKJ6
    Conserved Domains (2) summary
    smart00558
    Location:1062 → 1132
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cl21464
    Location:1149 → 1262
    cupin_like; Conserved domain found in cupin and related proteins

  3. XM_033765271.1 → XP_033621162.1  lysine-specific demethylase 3A isoform X2

    Conserved Domains (2) summary
    smart00558
    Location:576 → 646
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cl40423
    Location:663 → 776
    cupin_RmlC-like; RmlC-like cupin superfamily
Nucleotide Protein
Heading Accession and Version

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