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Zscan29 zinc finger and SCAN domain containing 29 [ Fukomys damarensis (Damara mole-rat) ]

Gene ID: 104862669, updated on 12-Mar-2024

Summary

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Gene symbol
Zscan29
Gene description
zinc finger and SCAN domain containing 29
Locus tag
H920_05606
Gene type
protein coding
RefSeq status
MODEL
Organism
Fukomys damarensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900929.1 (33060364..33074160)
101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011044718.1 (9870417..9884258, complement)

NW_022900929.1Genomic Context describing neighboring genes Neighboring gene tumor protein p53 binding protein 1 Neighboring gene uncharacterized LOC117286529 Neighboring gene tubulin gamma complex component 4 Neighboring gene adenosine deaminase like Neighboring gene luc7-like protein 3 Neighboring gene leucine carboxyl methyltransferase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and SCAN domain-containing protein 29
Names
Zinc finger and SCAN domain-containing protein 29

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DMR_v1.0_HiC Primary Assembly

Genomic

  1. NW_022900929.1 Reference DMR_v1.0_HiC Primary Assembly

    Range
    33060364..33074160
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010624831.2 → XP_010623133.1  zinc finger and SCAN domain-containing protein 29 isoform X3

    Conserved Domains (5) summary
    smart00431
    Location:14 → 124
    SCAN; leucine rich region
    pfam02023
    Location:14 → 102
    SCAN; SCAN domain
    pfam03221
    Location:687 → 753
    HTH_Tnp_Tc5; Tc5 transposase DNA-binding domain
    pfam13837
    Location:244 → 325
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    cl21459
    Location:618 → 667
    HTH; Helix-turn-helix domains

  2. XM_033764968.1 → XP_033620859.1  zinc finger and SCAN domain-containing protein 29 isoform X1

    UniProtKB/TrEMBL
    A0A091DRT8
    Conserved Domains (4) summary
    smart00431
    Location:14 → 124
    SCAN; leucine rich region
    COG5048
    Location:669 → 837
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:709 → 729
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13837
    Location:408 → 489
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

  3. XM_033764969.1 → XP_033620860.1  zinc finger and SCAN domain-containing protein 29 isoform X2

    UniProtKB/TrEMBL
    A0A091DRT8

  4. XM_010624828.2 → XP_010623130.1  zinc finger and SCAN domain-containing protein 29 isoform X1

    See identical proteins and their annotated locations for XP_010623130.1

    UniProtKB/TrEMBL
    A0A091DRT8
    Conserved Domains (4) summary
    smart00431
    Location:14 → 124
    SCAN; leucine rich region
    COG5048
    Location:669 → 837
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:709 → 729
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13837
    Location:408 → 489
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

  5. XM_033764970.1 → XP_033620861.1  zinc finger and SCAN domain-containing protein 29 isoform X4

RNA

  1. XR_780391.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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