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Lpp LIM domain containing preferred translocation partner in lipoma [ Fukomys damarensis (Damara mole-rat) ]

Gene ID: 104862285, updated on 12-Mar-2024

Summary

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Gene symbol
Lpp
Gene description
LIM domain containing preferred translocation partner in lipoma
Locus tag
H920_05352
See related
Ensembl:ENSFDAG00000013431
Gene type
protein coding
RefSeq status
MODEL
Organism
Fukomys damarensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900924.1 (49383095..49995335, complement)
101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011044716.1 (8177581..8790077, complement)

NW_022900924.1Genomic Context describing neighboring genes Neighboring gene tumor protein p63 Neighboring gene tumor protein p63 regulated 1 Neighboring gene uncharacterized LOC109118073 Neighboring gene coiled-coil domain-containing protein 93-like Neighboring gene uncharacterized LOC104862287

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lipoma-preferred partner
Names
Lipoma-preferred partner

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DMR_v1.0_HiC Primary Assembly

Genomic

  1. NW_022900924.1 Reference DMR_v1.0_HiC Primary Assembly

    Range
    49383095..49995335 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010624126.3 → XP_010622428.1  lipoma-preferred partner isoform X1

    See identical proteins and their annotated locations for XP_010622428.1

    UniProtKB/TrEMBL
    A0A091DM17
    Conserved Domains (4) summary
    cd09350
    Location:417 → 470
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:477 → 529
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:537 → 602
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cl23782
    Location:256 → 335
    RCR; Chitin synthesis regulation, resistance to Congo red

  2. XM_010624129.2 → XP_010622431.1  lipoma-preferred partner isoform X1

    See identical proteins and their annotated locations for XP_010622431.1

    UniProtKB/TrEMBL
    A0A091DM17
    Conserved Domains (4) summary
    cd09350
    Location:417 → 470
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:477 → 529
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:537 → 602
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cl23782
    Location:256 → 335
    RCR; Chitin synthesis regulation, resistance to Congo red

  3. XM_010624124.2 → XP_010622426.1  lipoma-preferred partner isoform X1

    See identical proteins and their annotated locations for XP_010622426.1

    UniProtKB/TrEMBL
    A0A091DM17
    Related
    ENSFDAP00000004144.1, ENSFDAT00000017718.1
    Conserved Domains (4) summary
    cd09350
    Location:417 → 470
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:477 → 529
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:537 → 602
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cl23782
    Location:256 → 335
    RCR; Chitin synthesis regulation, resistance to Congo red

  4. XM_010624127.2 → XP_010622429.1  lipoma-preferred partner isoform X1

    See identical proteins and their annotated locations for XP_010622429.1

    UniProtKB/TrEMBL
    A0A091DM17
    Conserved Domains (4) summary
    cd09350
    Location:417 → 470
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:477 → 529
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:537 → 602
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cl23782
    Location:256 → 335
    RCR; Chitin synthesis regulation, resistance to Congo red

  5. XM_010624128.2 → XP_010622430.1  lipoma-preferred partner isoform X1

    See identical proteins and their annotated locations for XP_010622430.1

    UniProtKB/TrEMBL
    A0A091DM17
    Conserved Domains (4) summary
    cd09350
    Location:417 → 470
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:477 → 529
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:537 → 602
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cl23782
    Location:256 → 335
    RCR; Chitin synthesis regulation, resistance to Congo red

  6. XM_019207505.1 → XP_019063050.1  lipoma-preferred partner isoform X1

    UniProtKB/TrEMBL
    A0A091DM17

  7. XM_010624125.3 → XP_010622427.1  lipoma-preferred partner isoform X1

    See identical proteins and their annotated locations for XP_010622427.1

    UniProtKB/TrEMBL
    A0A091DM17
    Conserved Domains (4) summary
    cd09350
    Location:417 → 470
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:477 → 529
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:537 → 602
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cl23782
    Location:256 → 335
    RCR; Chitin synthesis regulation, resistance to Congo red

  8. XM_010624131.2 → XP_010622433.1  lipoma-preferred partner isoform X1

    See identical proteins and their annotated locations for XP_010622433.1

    UniProtKB/TrEMBL
    A0A091DM17
    Conserved Domains (4) summary
    cd09350
    Location:417 → 470
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:477 → 529
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:537 → 602
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cl23782
    Location:256 → 335
    RCR; Chitin synthesis regulation, resistance to Congo red

  9. XM_010624123.2 → XP_010622425.1  lipoma-preferred partner isoform X1

    See identical proteins and their annotated locations for XP_010622425.1

    UniProtKB/TrEMBL
    A0A091DM17
    Conserved Domains (4) summary
    cd09350
    Location:417 → 470
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:477 → 529
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:537 → 602
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cl23782
    Location:256 → 335
    RCR; Chitin synthesis regulation, resistance to Congo red

  10. XM_010624132.3 → XP_010622434.1  lipoma-preferred partner isoform X1

    See identical proteins and their annotated locations for XP_010622434.1

    UniProtKB/TrEMBL
    A0A091DM17
    Conserved Domains (4) summary
    cd09350
    Location:417 → 470
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:477 → 529
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:537 → 602
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cl23782
    Location:256 → 335
    RCR; Chitin synthesis regulation, resistance to Congo red

  11. XM_010624130.2 → XP_010622432.1  lipoma-preferred partner isoform X1

    See identical proteins and their annotated locations for XP_010622432.1

    UniProtKB/TrEMBL
    A0A091DM17
    Conserved Domains (4) summary
    cd09350
    Location:417 → 470
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:477 → 529
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:537 → 602
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cl23782
    Location:256 → 335
    RCR; Chitin synthesis regulation, resistance to Congo red

  12. XM_010624134.2 → XP_010622436.1  lipoma-preferred partner isoform X2

    Conserved Domains (3) summary
    cd09350
    Location:308 → 361
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cl02475
    Location:428 → 493
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    cl23782
    Location:147 → 226
    RCR; Chitin synthesis regulation, resistance to Congo red

  13. XM_010624135.2 → XP_010622437.1  lipoma-preferred partner isoform X3

    Conserved Domains (3) summary
    cd09350
    Location:293 → 346
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cl02475
    Location:413 → 478
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    cl23782
    Location:132 → 211
    RCR; Chitin synthesis regulation, resistance to Congo red
Nucleotide Protein
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