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Sybu syntabulin [ Fukomys damarensis (Damara mole-rat) ]

Gene ID: 104859056, updated on 12-Mar-2024

Summary

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Gene symbol
Sybu
Gene description
syntabulin
Locus tag
H920_03358
See related
Ensembl:ENSFDAG00000002233
Gene type
protein coding
RefSeq status
MODEL
Organism
Fukomys damarensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900917.1 (13958751..14019372)
101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011044462.1 (9611974..9672622)

NW_022900917.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104859055 Neighboring gene protein SMG5-like Neighboring gene estrogen receptor binding site associated antigen 9 Neighboring gene PKHD1 like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in axonal transport of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntabulin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DMR_v1.0_HiC Primary Assembly

Genomic

  1. NW_022900917.1 Reference DMR_v1.0_HiC Primary Assembly

    Range
    13958751..14019372
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010619530.3 → XP_010617832.1  syntabulin isoform X2

    Conserved Domains (1) summary
    pfam15290
    Location:173 → 354
    Syntaphilin; Golgi-localized syntaxin-1-binding clamp

  2. XM_010619528.3 → XP_010617830.1  syntabulin isoform X1

    See identical proteins and their annotated locations for XP_010617830.1

    UniProtKB/TrEMBL
    A0A091DXR0
    Related
    ENSFDAP00000014770.1
    Conserved Domains (1) summary
    pfam15290
    Location:215 → 422
    Syntaphilin; Golgi-localized syntaxin-1-binding clamp

  3. XM_010619531.3 → XP_010617833.1  syntabulin isoform X3

    Conserved Domains (1) summary
    pfam15290
    Location:85 → 292
    Syntaphilin; Golgi-localized syntaxin-1-binding clamp

  4. XM_010619532.2 → XP_010617834.1  syntabulin isoform X4

    Conserved Domains (1) summary
    pfam15290
    Location:55 → 262
    Syntaphilin; Golgi-localized syntaxin-1-binding clamp
Nucleotide Protein
Heading Accession and Version

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