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Ptprb protein tyrosine phosphatase receptor type B [ Fukomys damarensis (Damara mole-rat) ]

Gene ID: 104857539, updated on 12-Mar-2024

Summary

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Gene symbol
Ptprb
Gene description
protein tyrosine phosphatase receptor type B
Locus tag
H920_02325
See related
Ensembl:ENSFDAG00000003534
Gene type
protein coding
RefSeq status
MODEL
Organism
Fukomys damarensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
Orthologs
human mouse all
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Genomic context

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See Ptprb in Genome Data Viewer
Location:
chromosome: Un
Exon count:
36
Annotation release Status Assembly Chr Location
102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900927.1 (35102520..35223656, complement)
101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011044130.1 (554940..676033, complement)

NW_022900927.1Genomic Context describing neighboring genes Neighboring gene CCR4-NOT transcription complex subunit 2 Neighboring gene potassium calcium-activated channel subfamily M regulatory beta subunit 4 Neighboring gene protein tyrosine phosphatase receptor type R Neighboring gene tetraspanin 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
receptor-type tyrosine-protein phosphatase beta
Names
Receptor-type tyrosine-protein phosphatase beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DMR_v1.0_HiC Primary Assembly

Genomic

  1. NW_022900927.1 Reference DMR_v1.0_HiC Primary Assembly

    Range
    35102520..35223656 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019206541.2 → XP_019062086.1  receptor-type tyrosine-protein phosphatase beta isoform X3

    UniProtKB/TrEMBL
    A0A091E0R3

  2. XM_019206540.2 → XP_019062085.1  receptor-type tyrosine-protein phosphatase beta isoform X2

  3. XM_019206539.2 → XP_019062084.1  receptor-type tyrosine-protein phosphatase beta isoform X1

    Related
    ENSFDAP00000015569.1

  4. XM_019206542.2 → XP_019062087.1  receptor-type tyrosine-protein phosphatase beta isoform X4

    Related
    ENSFDAP00000015570.1

RNA

  1. XR_002025127.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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