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Trim11 tripartite motif containing 11 [ Fukomys damarensis (Damara mole-rat) ]

Gene ID: 104853848, updated on 12-Mar-2024

Summary

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Gene symbol
Trim11
Gene description
tripartite motif containing 11
Locus tag
H920_18511
See related
Ensembl:ENSFDAG00000005691
Gene type
protein coding
RefSeq status
MODEL
Organism
Fukomys damarensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900915.1 (48335580..48343861, complement)
101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011047469.1 (183353..191419)

NW_022900915.1Genomic Context describing neighboring genes Neighboring gene obscurin-like Neighboring gene obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF Neighboring gene uncharacterized LOC104853835 Neighboring gene tripartite motif containing 17 Neighboring gene H3.4 histone, cluster member

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase TRIM11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DMR_v1.0_HiC Primary Assembly

Genomic

  1. NW_022900915.1 Reference DMR_v1.0_HiC Primary Assembly

    Range
    48335580..48343861 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033768090.1 → XP_033623981.1  E3 ubiquitin-protein ligase TRIM11

    UniProtKB/TrEMBL
    A0A091CPS1
    Conserved Domains (3) summary
    cd15811
    Location:288 → 456
    SPRY_PRY_TRIM11; PRY/SPRY domain of tripartite motif-binding protein 11 (TRIM11), also known as RING finger protein 92 (RNF92)
    cd16594
    Location:13 → 57
    RING-HC_TRIM11_like_C-IV; RING finger, HC subclass, found in tripartite motif-containing proteins, TRIM11 and TRIM27, and similar proteins
    cl00034
    Location:101 → 133
    Bbox_SF; B-box-type zinc finger superfamily
Nucleotide Protein
Heading Accession and Version

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