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Znf827 zinc finger protein 827 [ Fukomys damarensis (Damara mole-rat) ]

Gene ID: 104853091, updated on 12-Mar-2024

Summary

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Gene symbol
Znf827
Gene description
zinc finger protein 827
Locus tag
H920_18042
See related
Ensembl:ENSFDAG00000009750
Gene type
protein coding
RefSeq status
MODEL
Organism
Fukomys damarensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900950.1 (65068740..65224708, complement)
101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011047310.1 (2380363..2536320)

NW_022900950.1Genomic Context describing neighboring genes Neighboring gene chromosome unknown C4orf51 homolog Neighboring gene metabolism of cobalamin associated A Neighboring gene LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated Neighboring gene reeler domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 827

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DMR_v1.0_HiC Primary Assembly

Genomic

  1. NW_022900950.1 Reference DMR_v1.0_HiC Primary Assembly

    Range
    65068740..65224708 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010610930.3 → XP_010609232.1  zinc finger protein 827 isoform X2

    UniProtKB/TrEMBL
    A0A091CQX4
    Conserved Domains (4) summary
    COG5048
    Location:355 → 443
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:376 → 396
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:819 → 839
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:1146 → 1170
    zf-H2C2_2; Zinc-finger double domain

  2. XM_033760061.1 → XP_033615952.1  zinc finger protein 827 isoform X1

    UniProtKB/TrEMBL
    A0A091CQX4
    Conserved Domains (5) summary
    COG5048
    Location:356 → 444
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:377 → 397
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:820 → 840
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:1147 → 1171
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:1132 → 1156
    zf-H2C2_5; C2H2-type zinc-finger domain

  3. XM_033760062.1 → XP_033615953.1  zinc finger protein 827 isoform X3

    Conserved Domains (4) summary
    COG5048
    Location:356 → 444
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:377 → 397
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:820 → 840
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:818 → 840
    zf-C2H2; Zinc finger, C2H2 type

  4. XM_033760063.1 → XP_033615954.1  zinc finger protein 827 isoform X4

    Conserved Domains (4) summary
    COG5048
    Location:356 → 444
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:377 → 397
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:820 → 840
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:818 → 840
    zf-C2H2; Zinc finger, C2H2 type

  5. XM_033760064.1 → XP_033615955.1  zinc finger protein 827 isoform X4

    Conserved Domains (4) summary
    COG5048
    Location:356 → 444
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:377 → 397
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:820 → 840
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:818 → 840
    zf-C2H2; Zinc finger, C2H2 type
Nucleotide Protein
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