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Clp1 cleavage factor polyribonucleotide kinase subunit 1 [ Fukomys damarensis (Damara mole-rat) ]

Gene ID: 104851138, updated on 11-Apr-2024

Summary

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Gene symbol
Clp1
Gene description
cleavage factor polyribonucleotide kinase subunit 1
Locus tag
H920_16811
See related
Ensembl:ENSFDAG00000000234
Gene type
protein coding
RefSeq status
MODEL
Organism
Fukomys damarensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
Orthologs
human mouse all
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Genomic context

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See Clp1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900939.1 (3259081..3262757, complement)
101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011046920.1 (366102..370013, complement)

NW_022900939.1Genomic Context describing neighboring genes Neighboring gene mediator complex subunit 19 Neighboring gene zinc finger DHHC-type palmitoyltransferase 5 Neighboring gene uncharacterized LOC117283519 Neighboring gene yippee like 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polynucleotide 5'-hydroxyl-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA splicing, via endonucleolytic cleavage and ligation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mRNA cleavage factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyribonucleotide 5'-hydroxyl-kinase Clp1
Names
Polyribonucleotide 5'-hydroxyl-kinase Clp1
cleavage and polyadenylation factor I subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DMR_v1.0_HiC Primary Assembly

Genomic

  1. NW_022900939.1 Reference DMR_v1.0_HiC Primary Assembly

    Range
    3259081..3262757 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010608312.2 → XP_010606614.1  polyribonucleotide 5'-hydroxyl-kinase Clp1

    See identical proteins and their annotated locations for XP_010606614.1

    UniProtKB/TrEMBL
    A0A091CR80
    Related
    ENSFDAP00000013549.1
    Conserved Domains (2) summary
    COG5623
    Location:14 → 423
    CLP1; Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
    pfam16575
    Location:121 → 306
    CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop
Nucleotide Protein
Heading Accession and Version

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