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Phf1 PHD finger protein 1 [ Fukomys damarensis (Damara mole-rat) ]

Gene ID: 104849023, updated on 12-Mar-2024

Summary

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Gene symbol
Phf1
Gene description
PHD finger protein 1
Locus tag
H920_15463
See related
Ensembl:ENSFDAG00000014623
Gene type
protein coding
RefSeq status
MODEL
Organism
Fukomys damarensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
Orthologs
human mouse all
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Genomic context

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See Phf1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900932.1 (2251707..2255931)
101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011046425.1 (347121..351350)

NW_022900932.1Genomic Context describing neighboring genes Neighboring gene death domain associated protein Neighboring gene kinesin family member C1 Neighboring gene cutA divalent cation tolerance homolog Neighboring gene synaptic Ras GTPase activating protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methylated histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PHD finger protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DMR_v1.0_HiC Primary Assembly

Genomic

  1. NW_022900932.1 Reference DMR_v1.0_HiC Primary Assembly

    Range
    2251707..2255931
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019204713.2 → XP_019060258.1  PHD finger protein 1 isoform X2

  2. XM_010605284.3 → XP_010603586.1  PHD finger protein 1 isoform X1

    See identical proteins and their annotated locations for XP_010603586.1

    UniProtKB/TrEMBL
    A0A091CZ09
    Conserved Domains (4) summary
    smart00333
    Location:28 → 79
    TUDOR; Tudor domain
    cd15500
    Location:88 → 138
    PHD1_PHF1; PHD finger 1 found in PHD finger protein1 (PHF1)
    cd15582
    Location:187 → 238
    PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
    pfam14061
    Location:537 → 562
    Mtf2_C; Polycomb-like MTF2 factor 2

RNA

  1. XR_776619.3 RNA Sequence

  2. XR_776618.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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