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Patz1 POZ/BTB and AT hook containing zinc finger 1 [ Fukomys damarensis (Damara mole-rat) ]

Gene ID: 104848087, updated on 12-Mar-2024

Summary

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Gene symbol
Patz1
Gene description
POZ/BTB and AT hook containing zinc finger 1
Locus tag
H920_14869
Gene type
protein coding
RefSeq status
MODEL
Organism
Fukomys damarensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900924.1 (5061333..5080002, complement)
101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011046367.1 (5118501..5137179, complement)

NW_022900924.1Genomic Context describing neighboring genes Neighboring gene LIM domain kinase 2 Neighboring gene phosphoinositide-3-kinase interacting protein 1 Neighboring gene aquaporin-3-like Neighboring gene developmentally regulated GTP binding protein 1 Neighboring gene eukaryotic translation initiation factor 4E nuclear import factor 1 Neighboring gene SFI1 centrin binding protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytokine production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of immune system process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
POZ-, AT hook-, and zinc finger-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DMR_v1.0_HiC Primary Assembly

Genomic

  1. NW_022900924.1 Reference DMR_v1.0_HiC Primary Assembly

    Range
    5061333..5080002 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010603822.3 → XP_010602124.1  POZ-, AT hook-, and zinc finger-containing protein 1

    UniProtKB/TrEMBL
    A0A091D0J1
    Conserved Domains (8) summary
    smart00225
    Location:17 → 134
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG4049
    Location:575 → 610
    COG4049; Uncharacterized protein, contains archaeal-type C2H2 Zn-finger [General function prediction only]
    COG5048
    Location:356 → 493
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:332 → 352
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:5 → 132
    BTB; BTB/POZ domain
    pfam13465
    Location:344 → 369
    zf-H2C2_2; Zinc-finger double domain
    pfam13912
    Location:417 → 442
    zf-C2H2_6; C2H2-type zinc finger
    pfam16637
    Location:511 → 579
    zf-C2H2_assoc3; Putative zinc-finger between two C2H2 zinc-fingers on Patz
Nucleotide Protein
Heading Accession and Version

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