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CNTN1 contactin 1 [ Corvus cornix cornix ]

Gene ID: 104698320, updated on 12-Mar-2024

Summary

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Gene symbol
CNTN1
Gene description
contactin 1
See related
EnsemblRapid:ENSCCCG00025016608
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus cornix cornix (sub-species: cornix)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1A
Exon count:
24
Annotation release Status Assembly Chr Location
104 current ASM73873v5 (GCF_000738735.5) 1A NC_047057.1 (27844709..28074128)
101 previous assembly Hooded_Crow_genome (GCF_000738735.1) Unplaced Scaffold NW_010958998.1 (4516420..4650576)

Chromosome 1A - NC_047057.1Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2-like Neighboring gene patatin like phospholipase domain containing 8 Neighboring gene neuronal cell adhesion molecule Neighboring gene PDZ domain containing ring finger 4 Neighboring gene uncharacterized LOC120411933

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus cornix cornix Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM73873v5 Primary Assembly

Genomic

  1. NC_047057.1 Reference ASM73873v5 Primary Assembly

    Range
    27844709..28074128
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039570741.1 → XP_039426675.1  contactin-1

    Related
    ENSCCCP00025028178.1, ENSCCCT00025034464.1
    Conserved Domains (8) summary
    cd05851
    Location:244 → 331
    IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
    cd00063
    Location:613 → 704
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:815 → 896
    fn3; Fibronectin type III domain
    cd00096
    Location:46 → 50
    Ig; Ig strand A [structural motif]
    cd04970
    Location:506 → 604
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cd05727
    Location:146 → 234
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
    cd05852
    Location:416 → 504
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cl11960
    Location:44 → 138
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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