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SATB2 SATB homeobox 2 [ Corvus cornix cornix ]

Gene ID: 104693762, updated on 12-Mar-2024

Summary

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Gene symbol
SATB2
Gene description
SATB homeobox 2
See related
EnsemblRapid:ENSCCCG00025000357
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus cornix cornix (sub-species: cornix)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
12
Annotation release Status Assembly Chr Location
104 current ASM73873v5 (GCF_000738735.5) 7 NC_046337.1 (27960965..28093831)
101 previous assembly Hooded_Crow_genome (GCF_000738735.1) Unplaced Scaffold NW_010959760.1 (4827656..4955416, complement)

Chromosome 7 - NC_046337.1Genomic Context describing neighboring genes Neighboring gene chromosome 7 C2orf69 homolog Neighboring gene tRNA-yW synthesizing protein 5 Neighboring gene collagen alpha-1(I) chain-like Neighboring gene uncharacterized LOC104693761 Neighboring gene phospholipase C like 1 (inactive)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-binding protein SATB2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus cornix cornix Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM73873v5 Primary Assembly

Genomic

  1. NC_046337.1 Reference ASM73873v5 Primary Assembly

    Range
    27960965..28093831
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039555439.1 → XP_039411373.1  DNA-binding protein SATB2

    Conserved Domains (4) summary
    smart00389
    Location:612 → 669
    HOX; Homeodomain
    cd11585
    Location:60 → 155
    SATB1_N; N-terminal domain of SATB1 and similar proteins
    pfam02376
    Location:477 → 556
    CUT; CUT domain
    pfam16557
    Location:162 → 232
    CUTL; CUT1-like DNA-binding domain of SATB

  2. XM_039555440.1 → XP_039411374.1  DNA-binding protein SATB2

    Related
    ENSCCCP00025000690.1, ENSCCCT00025000708.1
    Conserved Domains (4) summary
    smart00389
    Location:612 → 669
    HOX; Homeodomain
    cd11585
    Location:60 → 155
    SATB1_N; N-terminal domain of SATB1 and similar proteins
    pfam02376
    Location:477 → 556
    CUT; CUT domain
    pfam16557
    Location:162 → 232
    CUTL; CUT1-like DNA-binding domain of SATB
Nucleotide Protein
Heading Accession and Version

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