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RBM12B RNA binding motif protein 12B [ Corvus cornix cornix ]

Gene ID: 104692750, updated on 12-Mar-2024

Summary

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Gene symbol
RBM12B
Gene description
RNA binding motif protein 12B
See related
EnsemblRapid:ENSCCCG00025003905
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus cornix cornix (sub-species: cornix)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
104 current ASM73873v5 (GCF_000738735.5) 2 NC_046333.1 (130181391..130192188, complement)
101 previous assembly Hooded_Crow_genome (GCF_000738735.1) Unplaced Scaffold NW_010959651.1 (23568119..23574024)

Chromosome 2 - NC_046333.1Genomic Context describing neighboring genes Neighboring gene RUNX1 partner transcriptional co-repressor 1 Neighboring gene triple QxxK/R motif containing Neighboring gene CBY1 interacting BAR domain containing 1 Neighboring gene transmembrane protein 67 Neighboring gene pyruvate dehydrogenase phosphatase catalytic subunit 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 12B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus cornix cornix Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM73873v5 Primary Assembly

Genomic

  1. NC_046333.1 Reference ASM73873v5 Primary Assembly

    Range
    130181391..130192188 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039548221.1 → XP_039404155.1  RNA-binding protein 12B

    Related
    ENSCCCP00025007186.1, ENSCCCT00025008023.1
    Conserved Domains (5) summary
    cd12513
    Location:307 → 387
    RRM3_RBM12B; RNA recognition motif 3 (RRM3) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12744
    Location:2 → 80
    RRM1_RBM12B; RNA recognition motif 1 (RRM1) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12748
    Location:424 → 498
    RRM4_RBM12B; RNA recognition motif 4 (RRM4) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12750
    Location:623 → 699
    RRM5_RBM12B; RNA recognition motif 5 (RRM5) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cl17169
    Location:172 → 257
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_039548218.1 → XP_039404152.1  RNA-binding protein 12B

    Related
    ENSCCCP00025007196.1, ENSCCCT00025008038.1
    Conserved Domains (5) summary
    cd12513
    Location:307 → 387
    RRM3_RBM12B; RNA recognition motif 3 (RRM3) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12744
    Location:2 → 80
    RRM1_RBM12B; RNA recognition motif 1 (RRM1) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12748
    Location:424 → 498
    RRM4_RBM12B; RNA recognition motif 4 (RRM4) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12750
    Location:623 → 699
    RRM5_RBM12B; RNA recognition motif 5 (RRM5) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cl17169
    Location:172 → 257
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_039548219.1 → XP_039404153.1  RNA-binding protein 12B

    Conserved Domains (5) summary
    cd12513
    Location:307 → 387
    RRM3_RBM12B; RNA recognition motif 3 (RRM3) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12744
    Location:2 → 80
    RRM1_RBM12B; RNA recognition motif 1 (RRM1) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12748
    Location:424 → 498
    RRM4_RBM12B; RNA recognition motif 4 (RRM4) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12750
    Location:623 → 699
    RRM5_RBM12B; RNA recognition motif 5 (RRM5) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cl17169
    Location:172 → 257
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. XM_039548220.1 → XP_039404154.1  RNA-binding protein 12B

    Conserved Domains (5) summary
    cd12513
    Location:307 → 387
    RRM3_RBM12B; RNA recognition motif 3 (RRM3) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12744
    Location:2 → 80
    RRM1_RBM12B; RNA recognition motif 1 (RRM1) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12748
    Location:424 → 498
    RRM4_RBM12B; RNA recognition motif 4 (RRM4) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12750
    Location:623 → 699
    RRM5_RBM12B; RNA recognition motif 5 (RRM5) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cl17169
    Location:172 → 257
    RRM_SF; RNA recognition motif (RRM) superfamily

  5. XM_010404981.4 → XP_010403283.1  RNA-binding protein 12B

    See identical proteins and their annotated locations for XP_010403283.1

    Related
    ENSCCCP00025007165.1, ENSCCCT00025007987.1
    Conserved Domains (5) summary
    cd12513
    Location:307 → 387
    RRM3_RBM12B; RNA recognition motif 3 (RRM3) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12744
    Location:2 → 80
    RRM1_RBM12B; RNA recognition motif 1 (RRM1) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12748
    Location:424 → 498
    RRM4_RBM12B; RNA recognition motif 4 (RRM4) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12750
    Location:623 → 699
    RRM5_RBM12B; RNA recognition motif 5 (RRM5) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cl17169
    Location:172 → 257
    RRM_SF; RNA recognition motif (RRM) superfamily

RNA

  1. XR_005601377.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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