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TNC tenascin C [ Corvus cornix cornix ]

Gene ID: 104688240, updated on 12-Mar-2024

Summary

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Gene symbol
TNC
Gene description
tenascin C
See related
EnsemblRapid:ENSCCCG00025004871
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus cornix cornix (sub-species: cornix)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
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Genomic context

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See TNC in Genome Data Viewer
Location:
chromosome: 17
Exon count:
27
Annotation release Status Assembly Chr Location
104 current ASM73873v5 (GCF_000738735.5) 17 NC_046346.1 (8446682..8518708)
101 previous assembly Hooded_Crow_genome (GCF_000738735.1) Unplaced Scaffold NW_010959408.1 (2529168..2601270, complement)

Chromosome 17 - NC_046346.1Genomic Context describing neighboring genes Neighboring gene astrotactin 2 Neighboring gene tripartite motif containing 32 Neighboring gene pappalysin 1 Neighboring gene TNF superfamily member 8 Neighboring gene TNF superfamily member 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tenascin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus cornix cornix Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM73873v5 Primary Assembly

Genomic

  1. NC_046346.1 Reference ASM73873v5 Primary Assembly

    Range
    8446682..8518708
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039561517.1 → XP_039417451.1  tenascin isoform X1

    Related
    ENSCCCP00025009016.1, ENSCCCT00025010146.1
    Conserved Domains (4) summary
    smart00060
    Location:925 → 1001
    FN3; Fibronectin type 3 domain
    cd00087
    Location:1828 → 2037
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
    pfam00041
    Location:563 → 634
    fn3; Fibronectin type III domain
    NF033759
    Location:178 → 559
    exchanger_TraA; outer membrane exchange protein TraA

  2. XM_020584482.2 → XP_020440071.2  tenascin isoform X2

    Related
    ENSCCCP00025009034.1, ENSCCCT00025010169.1
    Conserved Domains (4) summary
    smart00060
    Location:925 → 1001
    FN3; Fibronectin type 3 domain
    cd00087
    Location:1554 → 1763
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
    pfam00041
    Location:563 → 634
    fn3; Fibronectin type III domain
    NF033759
    Location:178 → 559
    exchanger_TraA; outer membrane exchange protein TraA

  3. XM_039561519.1 → XP_039417453.1  tenascin isoform X3

    Related
    ENSCCCP00025009044.1, ENSCCCT00025010180.1
    Conserved Domains (4) summary
    cd00063
    Location:925 → 1005
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00087
    Location:1372 → 1581
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
    pfam00041
    Location:563 → 634
    fn3; Fibronectin type III domain
    NF033759
    Location:178 → 559
    exchanger_TraA; outer membrane exchange protein TraA

  4. XM_039561520.1 → XP_039417454.1  tenascin isoform X4

    Related
    ENSCCCP00025009062.1, ENSCCCT00025010203.1
    Conserved Domains (4) summary
    cd00063
    Location:833 → 917
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00087
    Location:1281 → 1490
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
    pfam00041
    Location:563 → 634
    fn3; Fibronectin type III domain
    NF033759
    Location:178 → 559
    exchanger_TraA; outer membrane exchange protein TraA
Nucleotide Protein
Heading Accession and Version

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