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APOBEC3D apolipoprotein B mRNA editing enzyme catalytic subunit 3D [ Rhinopithecus roxellana (golden snub-nosed monkey) ]

Gene ID: 104682554, updated on 12-Mar-2024

Summary

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Gene symbol
APOBEC3D
Gene description
apolipoprotein B mRNA editing enzyme catalytic subunit 3D
See related
Ensembl:ENSRROG00000028557
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinopithecus roxellana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Rhinopithecus
Orthologs
human all
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Genomic context

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See APOBEC3D in Genome Data Viewer
Location:
chromosome: 13
Exon count:
7
Annotation release Status Assembly Chr Location
101 current ASM756505v1 (GCF_007565055.1) 13 NC_044561.1 (2096190..2107693, complement)
100 previous assembly Rrox_v1 (GCF_000769185.1) Unplaced Scaffold NW_010828796.1 (4516749..4527878)

Chromosome 13 - NC_044561.1Genomic Context describing neighboring genes Neighboring gene apolipoprotein B mRNA editing enzyme catalytic subunit 3G Neighboring gene apolipoprotein B mRNA editing enzyme catalytic subunit 3F Neighboring gene apolipoprotein B mRNA editing enzyme catalytic subunit 3C Neighboring gene apolipoprotein B mRNA editing enzyme catalytic subunit 3B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytidine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deoxycytidine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA cytosine deamination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytidine to uridine editing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to virus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of single stranded viral RNA replication via double stranded DNA intermediate IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA dC->dU-editing enzyme APOBEC-3F
Names
DNA dC->dU-editing enzyme APOBEC-3D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinopithecus roxellana Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM756505v1 Primary Assembly

Genomic

  1. NC_044561.1 Reference ASM756505v1 Primary Assembly

    Range
    2096190..2107693 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010389269.2 → XP_010387571.2  DNA dC->dU-editing enzyme APOBEC-3F

    UniProtKB/TrEMBL
    A0A2K6NVA4
    Conserved Domains (2) summary
    pfam18772
    Location:196 → 374
    APOBEC2
    pfam18782
    Location:10 → 189
    NAD2; Novel AID APOBEC clade 2
Nucleotide Protein
Heading Accession and Version

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