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COL7A1 collagen type VII alpha 1 chain [ Rhinopithecus roxellana (golden snub-nosed monkey) ]

Gene ID: 104667787, updated on 12-Mar-2024

Summary

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Gene symbol
COL7A1
Gene description
collagen type VII alpha 1 chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinopithecus roxellana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Rhinopithecus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
118
Annotation release Status Assembly Chr Location
101 current ASM756505v1 (GCF_007565055.1) 1 NC_044549.1 (57955700..57988222)
100 previous assembly Rrox_v1 (GCF_000769185.1) Unplaced Scaffold NW_010788472.1 (2382531..2415183)

Chromosome 1 - NC_044549.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 89 Neighboring gene cytochrome b-c1 complex subunit 1, mitochondrial Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 Neighboring gene urocortin 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: collagen alpha-1(VII) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinopithecus roxellana Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM756505v1 Primary Assembly

Genomic

  1. NC_044549.1 Reference ASM756505v1 Primary Assembly

    Range
    57955700..57988222
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010370347.2 → XP_010368649.2  LOW QUALITY PROTEIN: collagen alpha-1(VII) chain

    Conserved Domains (8) summary
    pfam01391
    Location:1295 → 1354
    Collagen; Collagen triple helix repeat (20 copies)
    smart00060
    Location:958 → 1036
    FN3; Fibronectin type 3 domain
    PHA03169
    Location:1708 → 1875
    PHA03169; hypothetical protein; Provisional
    cd00063
    Location:687 → 771
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00109
    Location:2873 → 2929
    KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
    cd01482
    Location:37 → 201
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:233 → 317
    fn3; Fibronectin type III domain
    pfam00092
    Location:1053 → 1221
    VWA; von Willebrand factor type A domain
Nucleotide Protein
Heading Accession and Version

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