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CLSTN1 calsyntenin 1 [ Rhinopithecus roxellana (golden snub-nosed monkey) ]

Gene ID: 104663070, updated on 12-Mar-2024

Summary

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Gene symbol
CLSTN1
Gene description
calsyntenin 1
See related
Ensembl:ENSRROG00000000286
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinopithecus roxellana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Rhinopithecus
Orthologs
human mouse all
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Genomic context

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See CLSTN1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
19
Annotation release Status Assembly Chr Location
101 current ASM756505v1 (GCF_007565055.1) 12 NC_044560.1 (5115909..5212658)
100 previous assembly Rrox_v1 (GCF_000769185.1) Unplaced Scaffold NW_010801304.1 (956184..1006684)

Chromosome 12 - NC_044560.1Genomic Context describing neighboring genes Neighboring gene leucine zipper and CTNNBIP1 domain containing Neighboring gene catenin beta interacting protein 1 Neighboring gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta Neighboring gene putative uncharacterized protein PIK3CD-AS1 Neighboring gene transmembrane protein 201

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables X11-like protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables amyloid-beta binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables kinesin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calsyntenin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinopithecus roxellana Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM756505v1 Primary Assembly

Genomic

  1. NC_044560.1 Reference ASM756505v1 Primary Assembly

    Range
    5115909..5212658
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030942452.1 → XP_030798312.1  calsyntenin-1 isoform X1

    UniProtKB/TrEMBL
    A0A2K6N7I0
    Conserved Domains (2) summary
    cd11304
    Location:168 → 258
    Cadherin_repeat; Cadherin tandem repeat domain
    cl22861
    Location:365 → 477
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  2. XM_030942454.1 → XP_030798314.1  calsyntenin-1 isoform X3

    UniProtKB/TrEMBL
    A0A2K6N7I0
    Conserved Domains (2) summary
    cd11304
    Location:168 → 258
    Cadherin_repeat; Cadherin tandem repeat domain
    cl22861
    Location:365 → 525
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  3. XM_030942453.1 → XP_030798313.1  calsyntenin-1 isoform X2

    UniProtKB/TrEMBL
    A0A2K6N7I4
    Conserved Domains (2) summary
    cd11304
    Location:158 → 248
    Cadherin_repeat; Cadherin tandem repeat domain
    cl22861
    Location:355 → 467
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
Heading Accession and Version

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