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JMJD6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase [ Balearica regulorum gibbericeps (East African grey crowned-crane) ]

Gene ID: 104632445, updated on 12-Mar-2024

Summary

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Gene symbol
JMJD6
Gene description
jumonji domain containing 6, arginine demethylase and lysine hydroxylase
Locus tag
N312_13282
Gene type
protein coding
RefSeq status
MODEL
Organism
Balearica regulorum gibbericeps (sub-species: gibbericeps)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Gruidae; Balearica
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See JMJD6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current ASM70989v1 (GCF_000709895.1) Unplaced Scaffold NW_010744653.1 (6724..14647, complement)

NW_010744653.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010744653.1 Unplaced Scaffold Reference ASM70989v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables P-TEFb complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H4R3 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional arginine demethylase and lysyl-hydroxylase JMJD6
Names
Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6
arginine demethylase and lysine hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Balearica regulorum gibbericeps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70989v1 Primary Assembly

Genomic

  1. NW_010744653.1 Reference ASM70989v1 Primary Assembly

    Range
    6724..14647 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010298304.1 → XP_010296606.1  bifunctional arginine demethylase and lysyl-hydroxylase JMJD6

    See identical proteins and their annotated locations for XP_010296606.1

    UniProtKB/TrEMBL
    A0A087V8C8
    Conserved Domains (1) summary
    pfam02373
    Location:131 → 245
    JmjC; JmjC domain, hydroxylase
Nucleotide Protein
Heading Accession and Version

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