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GRIA1 glutamate ionotropic receptor AMPA type subunit 1 [ Phaethon lepturus (White-tailed tropicbird) ]

Gene ID: 104627450, updated on 12-Mar-2024

Summary

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Gene symbol
GRIA1
Gene description
glutamate ionotropic receptor AMPA type subunit 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Phaethon lepturus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Eurypygimorphae; Phaethontiformes; Phaethontidae; Phaethon
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current ASM68728v1 (GCF_000687285.1) Unplaced Scaffold NW_010515345.1 (17667..142363, complement)

NW_010515345.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010515345.1 Unplaced Scaffold Reference ASM68728v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables AMPA glutamate receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in modulation of chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic transmission, glutamatergic IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of AMPA glutamate receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dendritic spine IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glutamate receptor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phaethon lepturus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68728v1

Genomic

  1. NW_010515345.1 Reference ASM68728v1

    Range
    17667..142363 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010295716.1 → XP_010294018.1  glutamate receptor 1 isoform X2

    Conserved Domains (4) summary
    cd06390
    Location:26 → 389
    PBP1_iGluR_AMPA_GluR1; N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor
    cd13729
    Location:406 → 787
    PBP2_iGluR_AMPA_GluR1; The ligand-binding domain of the AMPA (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic acid) subtype GluR1 of ionotropic glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
    pfam00060
    Location:538 → 817
    Lig_chan; Ligand-gated ion channel
    pfam01094
    Location:37 → 372
    ANF_receptor; Receptor family ligand binding region

  2. XM_010295719.1 → XP_010294021.1  glutamate receptor 1 isoform X5

    Conserved Domains (4) summary
    cd13729
    Location:337 → 718
    PBP2_iGluR_AMPA_GluR1; The ligand-binding domain of the AMPA (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic acid) subtype GluR1 of ionotropic glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
    pfam00060
    Location:469 → 748
    Lig_chan; Ligand-gated ion channel
    pfam01094
    Location:1 → 303
    ANF_receptor; Receptor family ligand binding region
    cl10011
    Location:1 → 320
    Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily

  3. XM_010295715.1 → XP_010294017.1  glutamate receptor 1 isoform X1

    Conserved Domains (4) summary
    cd06390
    Location:26 → 389
    PBP1_iGluR_AMPA_GluR1; N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor
    cd13729
    Location:406 → 787
    PBP2_iGluR_AMPA_GluR1; The ligand-binding domain of the AMPA (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic acid) subtype GluR1 of ionotropic glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
    pfam00060
    Location:538 → 817
    Lig_chan; Ligand-gated ion channel
    pfam01094
    Location:37 → 372
    ANF_receptor; Receptor family ligand binding region

  4. XM_010295717.1 → XP_010294019.1  glutamate receptor 1 isoform X3

    Conserved Domains (4) summary
    cd13729
    Location:326 → 707
    PBP2_iGluR_AMPA_GluR1; The ligand-binding domain of the AMPA (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic acid) subtype GluR1 of ionotropic glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
    pfam00060
    Location:458 → 737
    Lig_chan; Ligand-gated ion channel
    pfam01094
    Location:75 → 292
    ANF_receptor; Receptor family ligand binding region
    cl10011
    Location:26 → 309
    Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily

  5. XM_010295718.1 → XP_010294020.1  glutamate receptor 1 isoform X4

    Conserved Domains (4) summary
    cd13729
    Location:337 → 718
    PBP2_iGluR_AMPA_GluR1; The ligand-binding domain of the AMPA (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic acid) subtype GluR1 of ionotropic glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
    pfam00060
    Location:469 → 748
    Lig_chan; Ligand-gated ion channel
    pfam01094
    Location:1 → 303
    ANF_receptor; Receptor family ligand binding region
    cl10011
    Location:1 → 320
    Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily
Nucleotide Protein
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