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CLSTN1 calsyntenin 1 [ Tinamus guttatus (white-throated tinamou) ]

Gene ID: 104569273, updated on 12-Mar-2024

Summary

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Gene symbol
CLSTN1
Gene description
calsyntenin 1
Locus tag
N309_14438
Gene type
protein coding
RefSeq status
MODEL
Organism
Tinamus guttatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Tinamiformes; Tinamidae; Tinamus
Orthologs
human mouse all
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Genomic context

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See CLSTN1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current ASM70537v2 (GCF_000705375.1) Unplaced Scaffold NW_010582623.1 (110329..138296)

NW_010582623.1Genomic Context describing neighboring genes Neighboring gene leucine zipper and CTNNBIP1 domain containing Neighboring gene catenin beta interacting protein 1 Neighboring gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta Neighboring gene ubiquitin conjugating enzyme E2 J2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010582623.1 Unplaced Scaffold Reference ASM70537v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables X11-like protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables amyloid-beta binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables kinesin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calsyntenin-1
Names
Calsyntenin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tinamus guttatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70537v2

Genomic

  1. NW_010582623.1 Reference ASM70537v2

    Range
    110329..138296
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010216227.1 → XP_010214529.1  calsyntenin-1

    UniProtKB/TrEMBL
    A0A099Z951
    Conserved Domains (2) summary
    cd11304
    Location:18 → 136
    Cadherin_repeat; Cadherin tandem repeat domain
    cl22861
    Location:394 → 519
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
Heading Accession and Version

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