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LYVE1 lymphatic vessel endothelial hyaluronan receptor 1 [ Colius striatus (speckled mousebird) ]

Gene ID: 104561424, updated on 12-Mar-2024

Summary

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Gene symbol
LYVE1
Gene description
lymphatic vessel endothelial hyaluronan receptor 1
Locus tag
N325_08105
Gene type
protein coding
RefSeq status
MODEL
Organism
Colius striatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Coliiformes; Coliidae; Colius
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_12 current bColStr4.1.hap1 (GCF_028858725.1) 7 NC_084765.1 (10762588..10772283)
100 previous assembly ASM69071v1 (GCF_000690715.1) Unplaced Scaffold NW_010708342.1 (3450..11978, complement)

Chromosome 7 - NC_084765.1Genomic Context describing neighboring genes Neighboring gene CTR9 homolog, Paf1/RNA polymerase II complex component Neighboring gene inositol 1,4,5-triphosphate receptor associated 1 Neighboring gene ring finger protein 141 Neighboring gene adenosine monophosphate deaminase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hyaluronic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lymphatic vessel endothelial hyaluronic acid receptor 1
Names
Lymphatic vessel endothelial hyaluronic acid receptor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858725.1-RS_2023_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColStr4.1.hap1 Primary Assembly

Genomic

  1. NC_084765.1 Reference bColStr4.1.hap1 Primary Assembly

    Range
    10762588..10772283
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010207095.2 → XP_010205397.1  lymphatic vessel endothelial hyaluronic acid receptor 1

    UniProtKB/TrEMBL
    A0A091KCJ2
    Conserved Domains (2) summary
    pfam05283
    Location:125 → 243
    MGC-24; Multi-glycosylated core protein 24 (MGC-24), sialomucin
    cl02612
    Location:33 → 168
    Link_Domain; The link domain is a hyaluronan (HA)-binding domain. It functions to mediate adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It is found in the CD44 receptor and in human TSG-6. TSG-6 is the protein product of the tumor ...
Nucleotide Protein
Heading Accession and Version

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