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TRUB1 TruB pseudouridine synthase family member 1 [ Colius striatus (speckled mousebird) ]

Gene ID: 104560073, updated on 12-Mar-2024

Summary

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Gene symbol
TRUB1
Gene description
TruB pseudouridine synthase family member 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Colius striatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Coliiformes; Coliidae; Colius
Orthologs
human mouse all
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Genomic context

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See TRUB1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_12 current bColStr4.1.hap1 (GCF_028858725.1) 8 NC_084766.1 (30954830..30990157)
100 previous assembly ASM69071v1 (GCF_000690715.1) Unplaced Scaffold NW_010702309.1 (1727..29107)

Chromosome 8 - NC_084766.1Genomic Context describing neighboring genes Neighboring gene actin binding LIM protein 1 Neighboring gene FHF complex subunit HOOK interacting protein 2A Neighboring gene attractin like 1 Neighboring gene GDNF family receptor alpha 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pseudouridine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pseudouridylate synthase TRUB1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858725.1-RS_2023_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColStr4.1.hap1 Primary Assembly

Genomic

  1. NC_084766.1 Reference bColStr4.1.hap1 Primary Assembly

    Range
    30954830..30990157
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_062001514.1 → XP_061857498.1  pseudouridylate synthase TRUB1 isoform X1

  2. XM_062001515.1 → XP_061857499.1  pseudouridylate synthase TRUB1 isoform X2

Nucleotide Protein
Heading Accession and Version

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