Sign in to NCBI

Display Settings:

Format

Send to:

Choose Destination
We are sorry, but NCBI web applications do not support your browser and may not function properly. More information

    MDS_0064 GntR family transcriptional regulator [ Pseudomonas mendocina NK-01 ]

    Gene ID: 10454846, updated on 25-May-2013
    Gene symbol
    MDS_0064
    Gene description
    GntR family transcriptional regulator
    Locus tag
    MDS_0064
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pseudomonas mendocina NK-01 (strain: NK-01, culture-collection: CCTCC:M208005)
    Lineage
    Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
    Sequence :
    NC_015410.1 (76235..77701)

    NC_015410.1Genomic Context describing neighboring genes Neighboring gene N-acetyltransferase GCN5 Neighboring gene N-acetyltransferase GCN5 Neighboring gene FMN-binding negative transcriptional regulator Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Complete genome of Pseudomonas mendocina NK-01, which synthesizes medium-chain-length polyhydroxyalkanoates and alginate oligosaccharides. Guo W, et al. J Bacteriol, 2011 Jul. PMID 21551299.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Names
    GntR family transcriptional regulator

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_015410.1

      Range
      76235..77701
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_004377847.1 GntR family transcriptional regulator [Pseudomonas mendocina NK-01]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      F4DV80
      Conserved Domains (3) summary
      cd00609
      Location:124 – 481
      Blast Score: 402
      AAT_like; Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine ...
      cd07377
      Location:22 – 86
      Blast Score: 205
      WHTH_GntR; Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators
      COG1167
      Location:22 – 486
      Blast Score: 937
      ARO8; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version
    genomic CP002620.1 AEB56095.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • Protein Clusters
        Related Protein Clusters
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

      Related sites

      Feedback

      Subscription

      Recent activity

      Clear Turn Off Turn On

      Your browsing activity is empty.

      Activity recording is turned off.

      Turn recording back on

      See more...