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PCDH1 protocadherin 1 [ Mesitornis unicolor (brown roatelo) ]

Gene ID: 104539522, updated on 12-Mar-2024

Summary

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Gene symbol
PCDH1
Gene description
protocadherin 1
Locus tag
N332_13315
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesitornis unicolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Mesitornithidae; Mesitornis
Orthologs
human mouse all
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Genomic context

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See PCDH1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ASM69576v1 (GCF_000695765.1) Unplaced Scaffold NW_010156218.1 (67751..113630, complement)

NW_010156218.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010156218.1 Unplaced Scaffold Reference ASM69576v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-1
Names
Protocadherin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesitornis unicolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69576v1

Genomic

  1. NW_010156218.1 Reference ASM69576v1

    Range
    67751..113630 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010183113.1 → XP_010181415.1  protocadherin-1

    Conserved Domains (4) summary
    cd11304
    Location:437 → 533
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:156 → 203
    CA; Cadherin repeats
    pfam08374
    Location:740 → 950
    Protocadherin; Protocadherin
    cl09101
    Location:25 → 99
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
Nucleotide Protein
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