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PRDM4 PR/SET domain 4 [ Mesitornis unicolor (brown roatelo) ]

Gene ID: 104537890, updated on 12-Mar-2024

Summary

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Gene symbol
PRDM4
Gene description
PR/SET domain 4
Locus tag
N332_00970
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesitornis unicolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Mesitornithidae; Mesitornis
Orthologs
human mouse all
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Genomic context

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See PRDM4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current ASM69576v1 (GCF_000695765.1) Unplaced Scaffold NW_010174009.1 (1332..17719)

NW_010174009.1Genomic Context describing neighboring genes Neighboring gene PWP1 homolog, endonuclein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010174009.1 Unplaced Scaffold Reference ASM69576v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone deacetylase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone methyltransferase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PR domain zinc finger protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesitornis unicolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69576v1

Genomic

  1. NW_010174009.1 Reference ASM69576v1

    Range
    1332..17719
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010180905.1 → XP_010179207.1  PR domain zinc finger protein 4

    UniProtKB/TrEMBL
    A0A091QZC4
    Conserved Domains (5) summary
    smart00317
    Location:422 → 529
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:556 → 733
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:616 → 636
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:614 → 636
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:628 → 653
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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