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SMNDC1 survival motor neuron domain containing 1 [ Antrostomus carolinensis (chuck-will's-widow) ]

Gene ID: 104532682, updated on 12-Mar-2024

Summary

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Gene symbol
SMNDC1
Gene description
survival motor neuron domain containing 1
Locus tag
N321_06000
Gene type
protein coding
RefSeq status
MODEL
Organism
Antrostomus carolinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Caprimulgiformes; Caprimulgidae; Antrostomus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
101 current ASM70074v1 (GCF_000700745.1) Unplaced Scaffold NW_010295287.1 (56873..66203, complement)

NW_010295287.1Genomic Context describing neighboring genes Neighboring gene MAX interactor 1, dimerization protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010295287 Unplaced Scaffold Reference ASM70074v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
survival of motor neuron-related-splicing factor 30
Names
Survival of motor neuron-related-splicing factor 30

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Antrostomus carolinensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70074v1

Genomic

  1. NW_010295287.1 Reference ASM70074v1

    Range
    56873..66203 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010177945.2 → XP_010176247.1  survival of motor neuron-related-splicing factor 30

    See identical proteins and their annotated locations for XP_010176247.1

    UniProtKB/TrEMBL
    A0A094MHC2
    Conserved Domains (1) summary
    cd20399
    Location:73 → 128
    Tudor_SPF30; Tudor domain found in survival of motor neuron-related-splicing factor 30 (SPF30) and similar proteins
Nucleotide Protein
Heading Accession and Version

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