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TSR1 TSR1 ribosome maturation factor [ Antrostomus carolinensis (chuck-will's-widow) ]

Gene ID: 104522369, updated on 12-Mar-2024

Summary

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Gene symbol
TSR1
Gene description
TSR1 ribosome maturation factor
Gene type
protein coding
RefSeq status
MODEL
Organism
Antrostomus carolinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Caprimulgiformes; Caprimulgidae; Antrostomus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current ASM70074v1 (GCF_000700745.1) Unplaced Scaffold NW_010304911.1 (2170..4382, complement)

NW_010304911.1Genomic Context describing neighboring genes Neighboring gene serine racemase Neighboring gene small nucleolar RNA SNORD91 family

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010304911 Unplaced Scaffold Reference ASM70074v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables U3 snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of preribosome, small subunit precursor IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: pre-rRNA-processing protein TSR1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Antrostomus carolinensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70074v1

Genomic

  1. NW_010304911.1 Reference ASM70074v1

    Range
    2170..4382 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010164636.1 → XP_010162938.1  LOW QUALITY PROTEIN: pre-rRNA-processing protein TSR1 homolog

    Conserved Domains (1) summary
    pfam04950
    Location:1 → 273
    RIBIOP_C; 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal
Nucleotide Protein
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