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PCDH20 protocadherin 20 [ Buceros rhinoceros silvestris ]

Gene ID: 104495188, updated on 12-Mar-2024

Summary

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Gene symbol
PCDH20
Gene description
protocadherin 20
Locus tag
N320_04074
Gene type
protein coding
RefSeq status
MODEL
Organism
Buceros rhinoceros silvestris (sub-species: silvestris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Bucerotiformes; Bucerotidae; Buceros
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current ASM71030v1 (GCF_000710305.1) Unplaced Scaffold NW_010417198.1 (610..3733)

NW_010417198.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010417198.1 Unplaced Scaffold Reference ASM71030v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-20
Names
Protocadherin-20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Buceros rhinoceros silvestris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM71030v1

Genomic

  1. NW_010417198.1 Reference ASM71030v1

    Range
    610..3733
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010138123.1 → XP_010136425.1  protocadherin-20

    See identical proteins and their annotated locations for XP_010136425.1

    UniProtKB/TrEMBL
    A0A091H6C0
    Conserved Domains (3) summary
    cd11304
    Location:487 → 582
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam07782
    Location:761 → 860
    DC_STAMP; DC-STAMP-like protein
    cl09101
    Location:26 → 98
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
Nucleotide Protein
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